SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17461

Length: 464 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene17461
CGTCGTGACCTTGGCTGTCACTCATCTTGGATTTGACTCTTTAGCTTCATACATGAATGTGAGCTCCACTAGGCCTTACATTGGTGCCATCCTGGGTCGTGTATCCAACAGAATCCACAATGCACAGTTTACATTATATGGGAAAACATTTCATTTGCCCAAGAATGATGGCAATAACACTCTCCATGGAGGGTTGAGAGGCTTTGACAATGTGTTATGGAAAGTGAAAGAGTATAGAGGAGGAAGGAAGCCATCTATTAGGTTCACTTACCATAGCTTCGATGGAGAACAAGGTGAATCTAGATGTGATTTAGCTTTAAGTTCAGTTCTCACAGCTTAGATGAGCAAGGTGAAGCTAGATGTGACCTATCTTTAGAATATGGGCAAGAGTTTACTGTAACTAGCCTAATTCTCATCTCATGTATAAAATTAATTTAAGAATCTACAAAATTACACTCAAGATT

Ace file of the UniGene sp_v1.1_unigene17461 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aldose 1-epimerase (EC:5.1.3.3)	-	-	6.0e-22	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	non-cell-autonomous protein pathway2 plasmodesmal receptor	-	-	1.78525e-42	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	hexose metabolic process	GO:0019318	Biological Process	1.78525e-42	73%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	1.78525e-42	73%
Blast2go	isomerase activity	GO:0016853	Molecular Function	1.78525e-42	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	1.78525e-42	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	1.78525e-42	73%
Blast2go	Glycoside hydrolase-type carbohydrate-binding	IPR011013	-	1.78525e-42	73%
Blast2go	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	1.78525e-42	73%
Blast2go	Aldose 1-epimerase	IPR015443	-	1.78525e-42	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0J8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 158 aas, your sequence is shorter than subject: 113 - 383

Fln protein: VVTLAVTHLGFDSLASYMNVSSTRPYIGAILGRVSNRIHNAQFTLYGKTFHLPKNDGNNTLHGGLRGFDNVLWKVKEYRGGRKPSIRFTYHSFDGEQGESRCDLALSSVLTA*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGGATTTGACTCTTTAGCTTCATACATGAATGTGAGCTCCACTAGGCCTTACATTGGTGCCATCCTGGGTCGTGTATCCAACAGAATCCACAATGCACAGTTTACATTATATGGGAAAACATTTCATTTGCCCAAGAATGATGGCAATAACACTCTCCATGGAGGGTTGAGAGGCTTTGACAATGTGTTATGGAAAGTGAAAGAGTATAGAGGAGGAAGGAAGCCATCTATTAGGTTCACTTACCATAGCTTCGATGGAGAACAAGGTGAATCTAGATGTGATTTAGCTTTAAGTTCAGTTCTCACAGCTTAGATGAGCAAGGTGAAGCTAGATGTGACCTATCTTTAGAATATGGGCAAGAGTTTACTGTAACTAGCCTAATTCTCATCTCATGTATAAAATTAATTTAAGAATCTACAAAATTACACTCAAGATT

Fln Alignment:

sp_v1.1_unigene17461___LAVTHLGFDSLASYMNVSSTRPYIGAILGRVSNRIHNAQFTLYGKTFHLPKNDGNNTLHGGLRGFDNVLWKVKEYRGGRKPSIRFTYHSFDGEQG
A9P0J8_______________IADVALGYDSLASYMNVSSTRPYLGAILGRVSNRVKNAQFMLNGETYHLPKNDGNNTLHGGLRGFDNVLWKVKEYRGGRRPSVKFTYHSFDGEQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain