SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17451

Length: 914 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17451

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Swi3 multi-domain protein	-	-	5.0e-20	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	nucleic acid binding	-	-	0.0	54%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, CCHC-type	IPR001878	-	54%
Blast2go	Replication fork protection component Swi3	IPR012923	-	54%
Blast2go	Zinc finger, CCHC retroviral-type	IPR013084	-	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACR2

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 247 - 297

Fln protein: MEKKMKTNNGSSAPAPTGCYKCGRAGHWSRDCTFPPTTSKTPNFPSAAAGGGKQRQQEAIQSTEVPKVKKPPRTRPKLTPDLLLSNDGLGYVLEHIPRMLHFRGPGHEVSDLGNLIEAFIQWHSRLLPSVSFQYFVDRVEKVGASKRVRNCLRELRERVARGENPKTLHEPPVEPTSPVDDVMVDGGVGSEDPNKDVADDDIQEDLFDELYRYAVGENPISSSQKGSANEVGSLSFSQSPILNTTPE

Protein Length: 248

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCACATCGAAATACATATATATTTTGGCTATACAACATTCTTTTGTGCCAGAAAGTTTCCCGCCTAAAGTGAGGGGAAAAATAGAAATGGAGATGCAAATGCTCGTCTGTTGAGGCTGAGGGTGAAAACGAAATTGGAATCAGA_-_ATGGAGAAGAAGATGAAGACCAACAATGGATCATCGGCGCCTGCACCAACAGGCTGTTACAAGTGTGGCAGGGCAGGTCATTGGTCTCGAGACTGCACATTTCCCCCTACTACATCCAAGACCCCTAATTTCCCCTCCGCCGCGGCTGGAGGAGGGAAGCAGCGGCAACAAGAAGCTATCCAGTCGACCGAAGTTCCGAAGGTGAAAAAGCCGCCACGCACTCGTCCCAAGCTCACTCCCGATCTCCTCCTCTCCAATGACGGCCTCGGCTACGTTCTGGAGCACATCCCCCGCATGCTTCACTTCAGGGGCCCTGGTCATGAGGTGAGTGATCTGGGTAACCTGATTGAGGCTTTCATTCAATGGCATTCCCGCTTGCTACCTTCTGTCTCTTTCCAGTATTTTGTTGACAGAGTCGAGAAGGTCGGCGCCAGTAAACGTGTTAGGAACTGCCTTCGAGAGCTAAGAGAAAGGGTCGCCAGAGGAGAGAATCCAAAAACTCTGCACGAGCCTCCCGTGGAGCCGACTTCACCTGTAGATGATGTTATGGTAGATGGAGGTGTTGGATCAGAGGACCCAAATAAAGATGTTGCAGATGATGACATTCAAGAGGATTTGTTTGATGAACTCTATCGGTACGCAGTAGGAGAGAATCCAATTTCTTCTTCCCAAAAGGGTTCAGCAAATGAAGTTGGTAGCCTTTCTTTCTCTCAATCACCGATTCTAAATACTACTCCCGAGGA

Fln Alignment:

sp_v1.1_unigene17451___MEKKMKTNNGSSAPAPTGCYKCGRAGHWSRDCTFPPTTSKTPNFPSAAAGGGKQRQQEAIQSTEXXXXXXXXXXXXXXXXXXXXSNDGLGYVLEHIPRMLHFRGPGHEVSDLGNLIEAFIQWHSRLLPSVSFQYFVDRVEKVGASKRVRNCLRELRERVARGENPKTLHEPPVEPTSPXXXXXXXXXXXSEDPNKDVADDDIQEDLFDELYRYAVGENPISSSQKGSANEVGSLSFSQSPILNTTPE
D5ACR2_______________MEKKMKTINGSSAPAPTGCYKCGRAGHWSRDCTFAPSTSKPPNFPSSAAGGKQQQQQETIPSAEAPKVKKPPRTRPKLTPDLLLSNNGLGYVLEQIPRMLHFRGPGHEVSDLGNLIEAFIQWHSRLLPSVSFQNFVDRVEKVGSTKRVRTCLRELRERVARGENPKTLHEPPVERTSPVDDVTGDGEVGLEDLNKDVADDDIQEDLFDELYRQAVGEDPNSSSQKGSENVVDSHSFSQAPILNNTPE

SNPs (tot: 3)

Position	A %	C %	G %	Probability
433	16		83	0.994512
533	85		14	0.993533
582		12	87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain