SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17448

Length: 2011 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17448
CGTCGTGACCTTGGCTGTCATTCATGGGGTATTATCAAGAATAGAGAGGTGTGCATGGGGTTTTATAGGGCAGATCACCACATGGCAGGTGGAATTGCAGGAGTGGAAGGGGTCTGACTGGGCCTATCACCTAACCTGTAGATATCCATTGCTTCCCATTCCCTCTCATGGATTTGGATTTCCCCTGATTTGATTCAGGACAAAAGCCCTTGTGGCTCCCCTACAAATATGTATTTGCATATCTGAAATTTTCCTGGCCATAATAGCTGTGAGGCTTTTTCTTTTTTTCTTTCATTCAATTTCATGGCGGGGATTCCTGAGTTGGGTTGTTGATGAATAACAGGATCAGCAGCTCAGGGGCCCGGGGCTTGTAGGGGGATGGCACCCAACTGCATAGACTGTGCCCCTAGTGATCTGTTTTGCGCGGAGGATGCTTTTGGAGTTGTGGAATGGGGCGATGCAGAGACTGGAAGTTTGTATGGAGATGAGGATCAGCAGCATTATAATTTGGACATCTGTGACCAGCATGATGAGCATTTGTGGGATGACGGTGAACTTGTAGCTTTTGCAGAAAAAGAGACCCTCTATGTTCCTAACCCAGTTGAGAAAAACAGTGCTGAAGCTAAAGCTAGGCAGGATGCTGTGGATTGGATTTTGAAGGTTCATGCACATTATGGCTTTGGTCCTGTGAGTGCAGTGCTCTCAATAAACTATCTTGATCGGTTTTTGTCTGCAAATCAATTACAGCAAGATAAGCCATGGATGACTCAACTGGCAGCTGTGGCTTGCCTCTCCCTGGCTGCCAAGATGGATGAGACAGAGGTTCCCCTTCTCCTGGACTTTCAGGTTGAGGAGGCTAAGTATATATTCGAATCTCGCACCATTCAGAGAATGGAATTACTGGTGCTCAGTACCCTTGAATGGCGAATGAGCCCTGTGACACCTCTTTCCTACATTGATCATGCCAGTCGTATGATTGGGTTGGAGAATCACCATTGTTGGATTTTCACAATGCGCTGCAAGGAGATACTGTTGAATACACTCAGAGATGCAAAGTTTTTGGGCCTTCTGCCCTCTGTTGTAGCTGCTGCAATAATGCTGCATGTGATCAAGGAAACAGAGCTTGTTAATCCATGTCAGTACGAGAATCGCCTGCTCAGTGCCATGAAAGTTAACAAGGACATGTGTGAAAGGTGCATAGGACTACTCATTGCCCCTGAATCATCATCCTTGGGCAGTTTCTCTTTGGGTTTGAAAAGAAAGAGCAGCACCATCAATATTCCTGTTCCTGGCAGCCCAGATGGAGTGCTGGACGCTACCTTCAGCTGCAGCAGCAGCAGCTGTGGTAGCGGACAGAGCACCCCAGGGTCATATGATTCCAATAACTCCAGCATTCTCTGCATCTCACCAGCGGTGATAAAGAAGAGAAAGCTTAATTATGAGTTTTGTAGCGATCTTCATTGTTTGGAGGATTAGTAGATTACCATAAATACAAGTGCTCCTCTATGAAGAACGCTTTGGAAGCAAGCTTTGCTATTAAAACTTCATTTCAACTATACCTATCCAGAATTAAGTGCAAGTTCAGGCCTATAATAGGCAACTATTATAGCTCTATGCCATTATGTCTCGCATGGGAGAAACATATTGTTATTAAATACCATTCAATATGCTTATGATTCATGAATGCTTAAGAGATTCTGCTGCTGTGTGAATATAGGCTTCAATGAGTTTTCTGTATTTTGTAACACCAGTATCAACAGACAGGATGGATACACAGCAGAAAAGCTCTATTATCATAAGTGTATATAATCAAATGTGAACTGATAGGTAAATTGGATGGTGACCTTTGAAGTTTTAGAATTAGGGGGAGCAGGGTTTGAAGTGACAGCCCCATTTGCAGTACTCCACGAAATTTCCAATGGTCGGCAAGGTAGAGAGTATATGGTTTTGTGTGAGAGATCCCGAATCGATATTGTCGGCCACGGATCCTCACATGGGATTTCACCTCGTT

Ace file of the UniGene sp_v1.1_unigene17448

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D3-type cyclin (Fragment) n=3 Tax=Populus RepID=A8Y914_POPTR	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	d3-type cyclin	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	cell cycle	GO:0007049	Biological Process	68%
Blast2go	cell division	GO:0051301	Biological Process	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR95

Fln msg:

Fln protein: MAPNCIDCAPSDLFCAEDAFGVVEWGDAETGSLYGDEDQQHYNLDICDQHDEHLWDDGELVAFAEKETLYVPNPVEKNSAEAKARQDAVDWILKVHAHYGFGPVSAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYIFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGLLPSVVAAAIMLHVIKETELVNPCQYENRLLSAMKVNKDMCERCIGLLIAPESSSLGSFSLGLKRKSSTINIPVPGSPDGVLDATFSCSSSSCGSGQSTPGSYDSNNSSILCISPAVIKKRKLNYEFCSDLHCLED*

Protein Length: 367

Fln nts: CGTCGTGACCTTGGCTGTCATTCATGGGGTATTATCAAGAATAGAGAGGTGTGCATGGGGTTTTATAGGGCAGATCACCACATGGCAGGTGGAATTGCAGGAGTGGAAGGGGTCTGACTGGGCCTATCACCTAACCTGTAGATATCCATTGCTTCCCATTCCCTCTCATGGATTTGGATTTCCCCTGATTTGATTCAGGACAAAAGCCCTTGTGGCTCCCCTACAAATATGTATTTGCATATCTGAAATTTTCCTGGCCATAATAGCTGTGAGGCTTTTTCTTTTTTTCTTTCATTCAATTTCATGGCGGGGATTCCTGAGTTGGGTTGTTGATGAATAACAGGATCAGCAGCTCAGGGGCCCGGGGCTTGTAGGGGG_-_ATGGCACCCAACTGCATAGACTGTGCCCCTAGTGATCTGTTTTGCGCGGAGGATGCTTTTGGAGTTGTGGAATGGGGCGATGCAGAGACTGGAAGTTTGTATGGAGATGAGGATCAGCAGCATTATAATTTGGACATCTGTGACCAGCATGATGAGCATTTGTGGGATGACGGTGAACTTGTAGCTTTTGCAGAAAAAGAGACCCTCTATGTTCCTAACCCAGTTGAGAAAAACAGTGCTGAAGCTAAAGCTAGGCAGGATGCTGTGGATTGGATTTTGAAGGTTCATGCACATTATGGCTTTGGTCCTGTGAGTGCAGTGCTCTCAATAAACTATCTTGATCGGTTTTTGTCTGCAAATCAATTACAGCAAGATAAGCCATGGATGACTCAACTGGCAGCTGTGGCTTGCCTCTCCCTGGCTGCCAAGATGGATGAGACAGAGGTTCCCCTTCTCCTGGACTTTCAGGTTGAGGAGGCTAAGTATATATTCGAATCTCGCACCATTCAGAGAATGGAATTACTGGTGCTCAGTACCCTTGAATGGCGAATGAGCCCTGTGACACCTCTTTCCTACATTGATCATGCCAGTCGTATGATTGGGTTGGAGAATCACCATTGTTGGATTTTCACAATGCGCTGCAAGGAGATACTGTTGAATACACTCAGAGATGCAAAGTTTTTGGGCCTTCTGCCCTCTGTTGTAGCTGCTGCAATAATGCTGCATGTGATCAAGGAAACAGAGCTTGTTAATCCATGTCAGTACGAGAATCGCCTGCTCAGTGCCATGAAAGTTAACAAGGACATGTGTGAAAGGTGCATAGGACTACTCATTGCCCCTGAATCATCATCCTTGGGCAGTTTCTCTTTGGGTTTGAAAAGAAAGAGCAGCACCATCAATATTCCTGTTCCTGGCAGCCCAGATGGAGTGCTGGACGCTACCTTCAGCTGCAGCAGCAGCAGCTGTGGTAGCGGACAGAGCACCCCAGGGTCATATGATTCCAATAACTCCAGCATTCTCTGCATCTCACCAGCGGTGATAAAGAAGAGAAAGCTTAATTATGAGTTTTGTAGCGATCTTCATTGTTTGGAGGATTAG___TAGATTACCATAAATACAAGTGCTCCTCTATGAAGAACGCTTTGGAAGCAAGCTTTGCTATTAAAACTTCATTTCAACTATACCTATCCAGAATTAAGTGCAAGTTCAGGCCTATAATAGGCAACTATTATAGCTCTATGCCATTATGTCTCGCATGGGAGAAACATATTGTTATTAAATACCATTCAATATGCTTATGATTCATGAATGCTTAAGAGATTCTGCTGCTGTGTGAATATAGGCTTCAATGAGTTTTCTGTATTTTGTAACACCAGTATCAACAGACAGGATGGATACACAGCAGAAAAGCTCTATTATCATAAGTGTATATAATCAAATGTGAACTGATAGGTAAATTGGATGGTGACCTTTGAAGTTTTAGAATTAGGGGGAGCAGGGTTTGAAGTGACAGCCCCATTTGCAGTACTCCACGAAATTTCCAATGGTCGGCAAGGTAGAGAGTATATGGTTTTGTGTGAGAGATCCCGAATCGATATTGTCGGCCACGGATCCTCACATGGGATTTCACCTCGTT

Fln Alignment:

sp_v1.1_unigene17448___MAPNCIDCAPSDLFCAEDAFGVVEWGDAETGSLYGDEDQQHYNLDICDQH-----DEHLWDDGELVAFAEKETLYVPNPVEKNSAEAKARQDAVDWILKVHAHYGFGPVSAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYIFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGLLPSVVAAAIMLHVIKETELVNPCQYENRLLSAMKVNKDMCERCIGLLIAPEXXXXXXXXXXXXXXXXTINIPVPGSPDGVLDATFXXXXXXXXXXXXXXXXYDSNNSSILCISPAVIKKRKLNYEFCSDLHCLED
B8LR95_______________MAPSCIDCAPNDLFCAEDVFGVVAWDDGETGSLYGDEDQ-HYNLDICDQHFVSSIDEHLWDDGELAAFAERETLYVPNPVEKNSSEAKARQDAVDWILKVHAHYGFGPVTAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYLFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGFLPSVVAAAIMLHVIKEIELVNPYQYENRLLSAMKVNKDMCERCIGLLIAPESSSLGSFSLGLKRKSSSVNIPIPGSPDGVLDATFSCSSSSCGSGQSTPGSYDSNNSSILCISPAVIKKRKLN-EFCSDLHCLED

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
24	66		16	16	0.988813
25			50	50	1.0
28			66	33	1.0
87	85		14		0.993533
95			11	88	0.923564
96			11	88	0.923564
130		77		22	0.999999
215	10		90		0.90298
270	50			50	1.0
798		22	77		0.999999
813		27		72	1.0
1267	88			11	0.923564
1268			88	11	0.923564
1269		88	11		0.923564
1270	88		11		0.923564
1272		88		11	0.923564
1273	88		11		0.923564
1277	88	11			0.923564
1282		88		11	0.923564
1326	23	76			1.0
1329		76	15		0.999983
1330	76		23		1.0
1630		50		50	1.0
1671		10		90	0.90298
1673	90		10		0.90298
1675		10	90		0.90298
1677	11	11		77	0.968132
1695	88	11			0.923564
1696			11	88	0.923564
1703			88	11	0.923564
1704		88	11		0.923564
1705			11	88	0.923564
1706		11	88		0.923564
1710		11	88		0.923564
1712	88	11			0.923564
1715		11		88	0.923564
1760			71	28	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1328	1341	GCA GCA GCA GCA GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain