SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17443

Length: 563 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17443
CGTCGTGACCTTGGCTGTCACTCAGGTTTCAAGGGCCCTCTATCAGGCTCATCTTTAGTATCGATCGTTGTAGTGGGTTTGCGTTCCTTCATTCAATTTGATGTTGGGGCTCTGGGGCTTTCTGTTTTTCTGAACTTCCCAATTTCGCTTTATCAATGGGTGATGATTCTGCAAACGAGCGCGTGAATTATACACAGGAGCAAATGCAATTAGTGACGGAAATCACAAGCAATGAAGATTATTACATCATACTGGGAATTGAGAAGGATTCTCCTGTCGAGGAAATTCGCAAGGCCTACAGGAAATTATCATTGAAGATCCATCCAGACAAGAACAATGCTCCTGGTGCAGAGGAAGCTTTCAAGGCACTGTCCAATGCATTCCAGTGTCTAAACAACGACGAAACGAGGAGAAAATATGATCATGGTGATGATAGCAATGAGTTCGATTCCCCCAATTGTGAGAGACTCAATTTCCTGGTCCTTCTGCAGACATTACCCATGCTTCTACTTCTCCTGGTGAGCTATTTTCCGTCCTACGAGCCTAATTATTCGTTGCAGAAG

Ace file of the UniGene sp_v1.1_unigene17443

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ-like protein n=3 Tax=Arabidopsis RepID=Q8VZB6_ARATH	-	-	1.0e-25	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	2.91248e-27	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein folding	GO:0006457	Biological Process	2.91248e-27	77%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	2.91248e-27	77%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	2.91248e-27	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.91248e-27	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	2.91248e-27	77%
Blast2go	Heat shock protein DnaJ	IPR003095	-	2.91248e-27	77%
Blast2go	Heat shock protein DnaJ, conserved site	IPR018253	-	2.91248e-27	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV01

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 145 aas, your sequence is shorter than subject: 187 - 361

Fln protein: S*PWLSLRFQGPSIRLIFSIDRCSGFAFLHSI*CWGSGAFCFSELPNFALSMGDDSANERVNYTQEQMQLVTEITSNEDYYIILGIEKDSPVEEIRKAYRKLSLKIHPDKNNAPGAEEAFKALSNAFQCLNNDETRRKYDHGDDSNEFDSPNCERLNFLVLLQTLPMLLLLLVSYFPSYEPNYSLQK

Protein Length: 188

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTCAAGGGCCCTCTATCAGGCTCATCTTTAGTATCGATCGTTGTAGTGGGTTTGCGTTCCTTCATTCAATTTGATGTTGGGGCTCTGGGGCTTTCTGTTTTTCTGAACTTCCCAATTTCGCTTTATCAATGGGTGATGATTCTGCAAACGAGCGCGTGAATTATACACAGGAGCAAATGCAATTAGTGACGGAAATCACAAGCAATGAAGATTATTACATCATACTGGGAATTGAGAAGGATTCTCCTGTCGAGGAAATTCGCAAGGCCTACAGGAAATTATCATTGAAGATCCATCCAGACAAGAACAATGCTCCTGGTGCAGAGGAAGCTTTCAAGGCACTGTCCAATGCATTCCAGTGTCTAAACAACGACGAAACGAGGAGAAAATATGATCATGGTGATGATAGCAATGAGTTCGATTCCCCCAATTGTGAGAGACTCAATTTCCTGGTCCTTCTGCAGACATTACCCATGCTTCTACTTCTCCTGGTGAGCTATTTTCCGTCCTACGAGCCTAATTATTCGTTGCAGAAG

Fln Alignment:

sp_v1.1_unigene17443___ALSMGD-DSANERV--NYTQEQMQLVTEITSNEDYYIILGIEKDSPVEEIRKAYRKLSLKIHPDKNNAPGAEEAFKALSNAFQCLNNDETRRKYDHGDDSNEFD
A9NV01_______________AAKMSDISSGNSRGARNYTDEQVEIVRLIKRNKDYYVILGLEKNCSVEDVRKAYRKLSLRVHPDKNKAPGSEEAFKAVSKAFQCLSNEEMRRKYDLTGPDEDFE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
105		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain