SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17440

Length: 1224 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17440

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1218 domain containing protein	-	-	7.0e-21	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1218	IPR009606	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMZ0

Fln msg:

Fln protein: MALSDAGYIRLLVTSLGALAFVLGVIAENKKPAAGYSIIKKDIAICIYPHDPTIALGSFSIVFLLLSSIFGVVSIFYPYKGKAVPVYALQRSPALVVFSVIAVALFFLTEGLLMWATITEGLHRTYNTHHDLQTTCPTAKTGLFGGAAFLALDTSLFWLICQMLTLNARADYELDDDEDLKGKYGQVMATDYTPGAVHVQPSV*

Protein Length: 205

Fln nts: ATGGGGAGGACGCTTTAGAAGGGGTCTTTTTCACGCAACATGCATGCATCACCATGGAAGAATAGTTCTTGTCCAGGTGGGAATGAAATCGAGGGGGGGTTTGACTCCACAAATATAACTGATCTACTGATCTCCTCCCATATTGGCGAGAATCTCGACTGAGAATCTGGGCTGGGTGCCTAGGGTTGTTATAAATTACAGACATACCGTAAAGGTTTCGTCAAATTTCTGTATGCACTAGGAGTGGCACTGTTCAGATTTCTGTATCGGGATTCCAGGCATA_-_ATGGCTCTATCTGATGCTGGGTACATTAGGCTTCTTGTGACGTCACTTGGAGCTTTGGCTTTTGTCTTGGGGGTCATAGCGGAGAACAAGAAGCCTGCTGCTGGATACTCTATAATAAAAAAAGACATCGCCATCTGCATTTACCCACATGATCCTACTATTGCCTTGGGCAGCTTTTCTATCGTATTCTTGTTATTATCATCGATTTTTGGTGTAGTATCAATATTTTATCCCTACAAAGGCAAGGCAGTTCCTGTGTATGCTCTTCAGAGAAGTCCTGCTCTTGTAGTGTTTTCAGTTATTGCTGTGGCTCTCTTTTTCCTTACAGAAGGCCTCCTGATGTGGGCTACCATCACAGAAGGTCTGCATCGAACCTACAACACACATCATGATTTACAGACAACCTGCCCAACTGCAAAGACAGGCCTATTTGGTGGAGCTGCTTTCCTGGCTTTGGATACTTCTCTGTTTTGGCTGATTTGTCAGATGCTTACTCTTAATGCAAGAGCAGATTATGAATTGGATGATGATGAGGATCTGAAAGGGAAGTATGGACAGGTAATGGCTACAGATTATACACCTGGGGCTGTTCATGTGCAGCCTTCAGTTTAA___ATTTCTGCATATTTTGGAGAATCTGATGTTAATCTATTCATCCCCATTTGTACTTTTTAATTTCATAACTTGATAGACAAAACATAACCCTTGATCTGAAGCTCTGTGGTTGTAAGCTCTTTGGTGTTGAGCTTAATTGATAAGTATTATGTAATAAACAAATTTATGCGAGTGAGATAACCTGCTTGGTAAGCGTTTATACTTGCATGCAGGGAAACAAAAAATTCTATAATGAAAATTGAAAGAATGGTATTGACGTCATTTTCAATTAAAACTGTGTTCCAGGGTACTCATGTATATTATTTCTGCTAATGAAAAATTAAGCTACC

Fln Alignment:

sp_v1.1_unigene17440___MALSDAGYIRLLVTSLGALAFVLGVIAENKKPAAGYSIIKKDIAICIYPHDPTIAXXXXXXXXXXXXXXXXVVSIFYPYKGKAVPVYALQRSPALVVFSVIAVALFFLTEGLLMWATITEGLHRTYNTHHDLQTTCPTAKTGLFGGAAFLALDTSLFWLICQMLTLNARADYELDDDEDLKGKYGQVMATDY-TPGAVHVQPSV
A9NMZ0_______________MALADVGYIRLLVITLGVLSFVLGIIAENKKPAGGTAIPGKGVVICKYPHDPSIALGSFSIIFLLLSSICGVISIFYPYKGKAVSVYALQRSPALVVFSAIAVALFFLAEGLMMWATITEGLHRTYNTHHNLETDCPTAKTGLFGGAAFLALDTSLFWLICQMLTLNARADYELDDDEDLKGKYGQVMATDYNAAGAAHLQPSV

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
111		87		12	0.992554
112	88		11		0.923564
113	77		22		0.999999
114	77		22		0.999999
115			22	77	0.999999
116	77	11	11		0.968132
117			11	88	0.923564
118	88			11	0.923564
119	88	11			0.923564
120		88	11		0.923564
122			90	10	0.90298
128		80	20		0.999996
129			20	80	0.999996
130		10	90		0.90298
131	70		10	10	0.922578
132			10	90	0.90298
133		90		10	0.90298
134		10		90	0.90298
135	10	90			0.90298
136	15	84			0.999986
138		76	23		1.0
139	7	69	15	7	0.999985
140		76	15		0.999983
941	1	91			1.0
1120	86			8	0.999539
1163	88	11			0.923564
1165	28			71	1.0
1166		14	28	57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain