SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17433

Length: 3052 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17433
CGTCGTGACCTTGGCTGTCACTGAGGTTGGAAGCCTTGGAGGTCATGGTCACCGCTCTCATACTGCCCAGGTGAAGGAAAGCGCTAAGCATAAGCATATACCTTTGGTACCTCCTTTAATGGTCATGCAAATAGTCACGGTGAAGGAAGCTGAATATATGAAGAGATATTGGCTTGCATCGTCACGGTAAAGGAAGCTGAATCTATATGAAGAGATATTGGCCTCTCTAGATTGTCTTGGGTTTGAACATTCTATTATAAGCAATCCATGCAGTGGAACTCCTTCAATGGTCATGCAAATGGTCACGGTGGAGGAAGCTGAATCTATACGAAGGGATATTGGCTTCTTTATATTGGATTGGGTTTGAACATTCTATTATAAGCAATCCATGCATAGAGCTTCAGAACATTAAAAGCTTACAATCTTATCCCATATCCTTTATATCTATCCTCTCCCTCTTTAATTTCGTCCCTGTAATTCCTTTTTCTTTCTCCGGTCTTTGATCTAGTGTTTCAGGAGAATGGTTTAGAGCAATTAGGCATGGAGAATTTCATTCGCTTCCATGGAGAGCTTCACGGGGATTTCAGAGCTTTAGATCGTTTCCGGTTTCAGGCTATAATTATAAGGTATTTTTTTAAATAGATCGAGCTATTTGAAAAGGCCATGGAGTGGGGATTTAATCACATTACAACCCAGACTCCTCTTCAGGTTAAATTGCATGCCACTGCATTGGAAATTGCAGTGGAAGAGTTGCCAGATAAACTGGTTTTTAGTGGATGATTGTCGAGGTGCTGCAGCTTATAAAGGCTGCACTCAATGATGCCGATCTACTCTTTCTTTCTAGAACTCCAGAGTTACTGTTATTCTTGTTTTACTAGGGTGGACTTTTGTGGCTGTGCTTCCTTTTATCTCAGTGGATGGTACCAGGTCATGGGTTTAAAGAATTATCTGCAGAGTGTTCGCTGTCAATTTTCAAGCAGTGTTTTACCGGCTTGTTGATATCCTATTTGATTATCTAGACAGCCATGGAGCGTTACAAGGTCATAAAAGAGTTGGGGGATGGCACTTATGGAAGTGTATGGAAGGCTTTGAATCAGCAGACACATGAGATAGTAGCTATAAAAAAAATGAAGAGGAAATATTATATCTGGGAAGAGTGTATGAATCTCCGGGAGGTCAAGTCTCTGCGGAAGTTGAACCATCCCAACATTATCAAGCTGAAGGAGGTCATTAGGGAAAATAATGAACTCTTTTTCATATTTGAATACATGGAATGTAATCTGTATCAAATAATGAAAGAGAGATCTACTCCTTTTTCAGAAACAGAAATTATCAAATTTTGCTATCAAATACTGCAAGGGTTATCCTATATGCACAGGAATGGTTATTTTCACCGAGACTTAAAACCAGAGAATTTGTTGGTAACTAGCGACTTGATTAAAATTGCGGATTTTGGGCTGGCAAGGGAAGTTCTCACCAGCCCACCTTATACAGATTATGTTTCAACGAGATGGTATCGTGCTCCAGAAGTCCTGCTGCAATCTCCGACATACACTACTGCAATTGACATGTGGGCAGTTGGGGCGATACTGGCGGAACTCTTCACTTTGCATCCTCTCTTTCCTGGTGAAAGTGAACTGGATGAAATTTACAAGATCTGTGGTGTGCTTGGCACTCCAGATTATGAGACTTGGCCTGACGGCATGCAGCTTGCAGCTTTTAGGAACTTCATCTTTCCCCAGTTTCTACCAGTCAATCTTTCAGTTCTTATTCCCCATGCTAGCCCAGAAGCAATCGATTTGATTACACGTCTATGTTCTTGGGACCCTCAGAAGAGGCCAACAGCAGAGCAGGCACTGCATCATCCTTTCTTCCTTAATGGCATGTCTATTCCTCTTTCTCTTGGGGGACATTTCCAAGATAATACATGTGCAGCAGAGGTAGATACAAATTTTCATTCCAAAAAGGCATGCAAGGCATGGAATGGGGAAAAAGAATCAAGCTTGGAATGCTTCCTCGGTTTGTCTTTGGGGCTCAAGCCAAGCCTTGGTCATCTAGGCGCAATGGGATCTCAAGGTGTGGGAGCAGTTAAGCAGGAAGTGGGGTCCTCTCCAGGGTGTCAGAGTAATCCAAAGCAGTCCCTATTTCAGGTTTTAAACTCAAGAGCAATTCTACCACTATTTTGCTCAAGCCCCAACCTGAATGTGGTTCCAGTCAAGTCCTCTCTACCTTCAGCATATACAGTAAACAGTCAAGTCATGTGGCCAACAATAGCAGGTCCACCTGCTGCTGCAGTTACTGTTTCTACTCTACAGCCAAGCATACTCGGCGATTTTAAGATCTTTGGAAAATCCATGGGGTTGGCTTCACAGTATGCGGGAAAGGAAGCCTTCCCCTTTCAGCTAGATAATCATATTTAGTTCATGCTTTCTGAACAAAGTAAATTTTTAATGAGTGAAATTCACCATTTTAAGCTGATAGCTTTAGTTCCTACGTGGAATGTATAAATGCACCATTGTCCATAAGGCAAGAGCTTTAATCTGGATTCCAGTATATATACCCAGTTTGGTTTCTAAATTCATTTGTAAATAGTTCCAACTGAGAGAGGATATATTTGAGGTAGATTGGCAATGGAATTACTGCTCATGAGAACAATTTATTTATGTTAGTGTTCTCATATACAATCCATCTCCGGCATCACCATTTTTACACGATTGGGATGCCGAAGTTTGTGAGGTAAGATTGTAATATTAGACCAGTTGAAAGTCATGCAATTTTGGTCACTGAACAGGTCATATGCCAATGCATGTGAGATGAAATCATCTTAGAATTGTGTCAAACTTTTCAAATAAGTTCTTTAGACTTGTTTGTCTTTCAGAAATGGCGTATCTTCTAGTCCTAGCATAGTGACACTTTTCATTTGAAGGCTGTAAATATTATATATCTACTTTTTCCAGCTACTACTTGGATGTTGTCATTTGACGGGTTATATAGAGTGTAACTATTGATTGATGATAGACGGCCTATATAGAGTGTAAGTACTGATTGATGA

Ace file of the UniGene sp_v1.1_unigene17433

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	82%
Blast2go	Anthranilate synthase.	EC:4.1.3.27	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	82%
Blast2go	Biosynthesis of phenylpropanoids	01061	82%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	82%
Blast2go	Biosynthesis of plant hormones	01070	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	82%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	glutamine metabolic process	GO:0006541	Biological Process	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	82%
Blast2go	anthranilate synthase activity	GO:0004049	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	82%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	82%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	82%
Blast2go	Protein kinase-like domain	IPR011009	-	82%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	82%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	82%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR77

Fln msg:

Fln protein: MERYKVIKELGDGTYGSVWKALNQQTHEIVAIKKMKRKYYIWEECMNLREVKSLRKLNHPNIIKLKEVIRENNELFFIFEYMECNLYQIMKERSTPFSETEIIKFCYQILQGLSYMHRNGYFHRDLKPENLLVTSDLIKIADFGLAREVLTSPPYTDYVSTRWYRAPEVLLQSPTYTTAIDMWAVGAILAELFTLHPLFPGESELDEIYKICGVLGTPDYETWPDGMQLAAFRNFIFPQFLPVNLSVLIPHASPEAIDLITRLCSWDPQKRPTAEQALHHPFFLNGMSIPLSLGGHFQDNTCAAEVDTNFHSKKACKAWNGEKESSLECFLGLSLGLKPSLGHLGAMGSQGVGAVKQEVGSSPGCQSNPKQSLFQVLNSRAILPLFCSSPNLNVVPVKSSLPSAYTVNSQVMWPTIAGPPAAAVTVSTLQPSILGDFKIFGKSMGLASQYAGKEAFPFQLDNHI*

Protein Length: 466

Fln nts: CGTCGTGACCTTGGCTGTCACTGAGGTTGGAAGCCTTGGAGGTCATGGTCACCGCTCTCATACTGCCCAGGTGAAGGAAAGCGCTAAGCATAAGCATATACCTTTGGTACCTCCTTTAATGGTCATGCAAATAGTCACGGTGAAGGAAGCTGAATATATGAAGAGATATTGGCTTGCATCGTCACGGTAAAGGAAGCTGAATCTATATGAAGAGATATTGGCCTCTCTAGATTGTCTTGGGTTTGAACATTCTATTATAAGCAATCCATGCAGTGGAACTCCTTCAATGGTCATGCAAATGGTCACGGTGGAGGAAGCTGAATCTATACGAAGGGATATTGGCTTCTTTATATTGGATTGGGTTTGAACATTCTATTATAAGCAATCCATGCATAGAGCTTCAGAACATTAAAAGCTTACAATCTTATCCCATATCCTTTATATCTATCCTCTCCCTCTTTAATTTCGTCCCTGTAATTCCTTTTTCTTTCTCCGGTCTTTGATCTAGTGTTTCAGGAGAATGGTTTAGAGCAATTAGGCATGGAGAATTTCATTCGCTTCCATGGAGAGCTTCACGGGGATTTCAGAGCTTTAGATCGTTTCCGGTTTCAGGCTATAATTATAAGGTATTTTTTTAAATAGATCGAGCTATTTGAAAAGGCCATGGAGTGGGGATTTAATCACATTACAACCCAGACTCCTCTTCAGGTTAAATTGCATGCCACTGCATTGGAAATTGCAGTGGAAGAGTTGCCAGATAAACTGGTTTTTAGTGGATGATTGTCGAGGTGCTGCAGCTTATAAAGGCTGCACTCAATGATGCCGATCTACTCTTTCTTTCTAGAACTCCAGAGTTACTGTTATTCTTGTTTTACTAGGGTGGACTTTTGTGGCTGTGCTTCCTTTTATCTCAGTGGATGGTACCAGGTCATGGGTTTAAAGAATTATCTGCAGAGTGTTCGCTGTCAATTTTCAAGCAGTGTTTTACCGGCTTGTTGATATCCTATTTGATTATCTAGACAGCC_-_ATGGAGCGTTACAAGGTCATAAAAGAGTTGGGGGATGGCACTTATGGAAGTGTATGGAAGGCTTTGAATCAGCAGACACATGAGATAGTAGCTATAAAAAAAATGAAGAGGAAATATTATATCTGGGAAGAGTGTATGAATCTCCGGGAGGTCAAGTCTCTGCGGAAGTTGAACCATCCCAACATTATCAAGCTGAAGGAGGTCATTAGGGAAAATAATGAACTCTTTTTCATATTTGAATACATGGAATGTAATCTGTATCAAATAATGAAAGAGAGATCTACTCCTTTTTCAGAAACAGAAATTATCAAATTTTGCTATCAAATACTGCAAGGGTTATCCTATATGCACAGGAATGGTTATTTTCACCGAGACTTAAAACCAGAGAATTTGTTGGTAACTAGCGACTTGATTAAAATTGCGGATTTTGGGCTGGCAAGGGAAGTTCTCACCAGCCCACCTTATACAGATTATGTTTCAACGAGATGGTATCGTGCTCCAGAAGTCCTGCTGCAATCTCCGACATACACTACTGCAATTGACATGTGGGCAGTTGGGGCGATACTGGCGGAACTCTTCACTTTGCATCCTCTCTTTCCTGGTGAAAGTGAACTGGATGAAATTTACAAGATCTGTGGTGTGCTTGGCACTCCAGATTATGAGACTTGGCCTGACGGCATGCAGCTTGCAGCTTTTAGGAACTTCATCTTTCCCCAGTTTCTACCAGTCAATCTTTCAGTTCTTATTCCCCATGCTAGCCCAGAAGCAATCGATTTGATTACACGTCTATGTTCTTGGGACCCTCAGAAGAGGCCAACAGCAGAGCAGGCACTGCATCATCCTTTCTTCCTTAATGGCATGTCTATTCCTCTTTCTCTTGGGGGACATTTCCAAGATAATACATGTGCAGCAGAGGTAGATACAAATTTTCATTCCAAAAAGGCATGCAAGGCATGGAATGGGGAAAAAGAATCAAGCTTGGAATGCTTCCTCGGTTTGTCTTTGGGGCTCAAGCCAAGCCTTGGTCATCTAGGCGCAATGGGATCTCAAGGTGTGGGAGCAGTTAAGCAGGAAGTGGGGTCCTCTCCAGGGTGTCAGAGTAATCCAAAGCAGTCCCTATTTCAGGTTTTAAACTCAAGAGCAATTCTACCACTATTTTGCTCAAGCCCCAACCTGAATGTGGTTCCAGTCAAGTCCTCTCTACCTTCAGCATATACAGTAAACAGTCAAGTCATGTGGCCAACAATAGCAGGTCCACCTGCTGCTGCAGTTACTGTTTCTACTCTACAGCCAAGCATACTCGGCGATTTTAAGATCTTTGGAAAATCCATGGGGTTGGCTTCACAGTATGCGGGAAAGGAAGCCTTCCCCTTTCAGCTAGATAATCATATTTAG___TTCATGCTTTCTGAACAAAGTAAATTTTTAATGAGTGAAATTCACCATTTTAAGCTGATAGCTTTAGTTCCTACGTGGAATGTATAAATGCACCATTGTCCATAAGGCAAGAGCTTTAATCTGGATTCCAGTATATATACCCAGTTTGGTTTCTAAATTCATTTGTAAATAGTTCCAACTGAGAGAGGATATATTTGAGGTAGATTGGCAATGGAATTACTGCTCATGAGAACAATTTATTTATGTTAGTGTTCTCATATACAATCCATCTCCGGCATCACCATTTTTACACGATTGGGATGCCGAAGTTTGTGAGGTAAGATTGTAATATTAGACCAGTTGAAAGTCATGCAATTTTGGTCACTGAACAGGTCATATGCCAATGCATGTGAGATGAAATCATCTTAGAATTGTGTCAAACTTTTCAAATAAGTTCTTTAGACTTGTTTGTCTTTCAGAAATGGCGTATCTTCTAGTCCTAGCATAGTGACACTTTTCATTTGAAGGCTGTAAATATTATATATCTACTTTTTCCAGCTACTACTTGGATGTTGTCATTTGACGGGTTATATAGAGTGTAACTATTGATTGATGATAGACGGCCTATATAGAGTGTAAGTACTGATTGATGA

Fln Alignment:

sp_v1.1_unigene17433___MERYKVIKELGDGTYGSVWKALNQQTHEIVAIKKMKRKYYIWEECMNLREVKSLRKLNHPNIIKLKEVIRENNELFFIFEYMECNLYQIMKERSTPFSETEIIKFCYQILQGLSYMHRNGYFHRDLKPENLLVTSDLIKIADFGLAREVLTSPPYTDYVSTRWYRAPEVLLQSPTYTTAIDMWAVGAILAELFTLHPLFPGESELDEIYKICGVLGTPDYETWPDGMQLAAFRNFIFPQFLPVNLSVLIPHASPEAIDLITRLCSWDPQKRPTAEQALHHPFFLNGMSIPLSL
B8LR77_______________MDRYKVIKELGDGTYGIVWKAINRSTNEIVAIKKMKRKYYSWEECMSLREVKSLRKMNHPNIVKLKEVIRENDHLYFVFEYMECNLYQLMKDNDKLFSESKVRNWCFQLFQALAYMHQHGYFHRDLKPENLLVTKDVIKIADFGLAREVCSQPPFTEYVSTRWYRAPEVLLQSSSYGSAVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVIGSPNHQTWSEGLRLATSMQYQFPQFISTHLSTLIPSASAEAIDLMASLCAWDPTKRPTAAESLKHPFFQACVYVPPSL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
246			90	10	0.90298
412	87		12		0.992554
2837		8		92	0.999718
2979	20			80	0.995493
2980	20			80	0.995493
2981	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain