SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17413

Length: 833 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17413

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class II chitinase 2-2 n=1 Tax=Pseudotsuga menziesii RepID=D7P705_PSEMZ	-	-	80%
FL-Next	tr=Class II chitinase 2-2; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	80%
Blast2go	class ii chitinase 2-2	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	79%
Blast2go	chitin catabolic process	GO:0006032	Biological Process	79%
Blast2go	chitinase activity	GO:0004568	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	79%
Blast2go	Glycoside hydrolase, family 19	IPR016283	-	79%
Blast2go	Lysozyme-like domain	IPR023346	-	79%

Full-Lengther Next Prediction

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
53		28		71	1.0
60	28			71	1.0
63		71		28	1.0
64	71			28	1.0
66			28	71	1.0
69		71		28	1.0
70	71		28		1.0
71			71	28	1.0
113	87		12		0.992554
118	12	87			0.992554
124			12	87	0.992554
125	87		12		0.992554
128	87			12	0.992554
131		12	87		0.992554
133	87	12			0.992554
278			25	75	1.0
281	75		25		1.0
283			25	75	1.0
294		75		25	1.0
295		25	75		1.0
297	75	25			1.0
299		12	75		0.975346
300	12	87			0.992554
335		11	88		0.923564
336	88		11		0.923564
340		11	88		0.923564
341	88			11	0.923564
342	88			11	0.923564
344	88		11		0.923564
345		11	88		0.923564
346	88			11	0.923564
348	77			11	0.968132
349	88	11			0.923564
351		11		88	0.923564
355	11	88			0.923564
365	12		87		0.992554
389	12		87		0.992554
397		88		11	0.923564
400		88		11	0.923564
406			11	88	0.923564
432	55		44		1.0
476			12	87	0.992554
477	87			12	0.992554
483			85	14	0.993533
488		85	14		0.993533
489		85		14	0.993533
490		85	14		0.993533
492		14		85	0.993533
493	85			14	0.993533
538		16	83		0.994512
557		80	20		0.995493
562		75		25	0.996473
592	25		75		0.996473
599	25			75	0.996473
628		25		75	0.996473
631		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain