SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17408

Length: 1223 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17408

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=B8LLK5_PICSI	-	-	75%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	lipoxygenase	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	68%
Blast2go	alpha-Linolenic acid metabolism	00592	68%
Blast2go	Biosynthesis of plant hormones	01070	68%
Blast2go	Metabolic pathways	01100	68%

Source	GOs	Term	Type	Identity
Blast2go	oxylipin biosynthetic process	GO:0031408	Biological Process	68%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	68%
Blast2go	iron ion binding	GO:0005506	Molecular Function	68%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	68%

Source	InterPros	Term	Type	Identity
Blast2go	Lipoxygenase	IPR000907	-	68%
Blast2go	Lipoxygenase, plant	IPR001246	-	68%
Blast2go	Lipoxygenase, C-terminal	IPR013819	-	68%
Blast2go	Lipoxygenase, iron binding site	IPR020833	-	68%
Blast2go	Lipoxygenase, conserved site	IPR020834	-	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 266 aas, your sequence is shorter than subject: 398 - 930

Fln protein: KVYDRIYDYDVYNDIGDPDSSPELLRPVLGGSNDFPYPRRCRTGRPRCKTDPNSESRASSIFIPPDERFPHTDFTDFGAHIINAFANLIVPEITDGAEAAFKTFEQIEQLYVQGFQSPYNSVSKLLQHEKNPLQIIKGILEAAKDNPLIDFVRPQVYAANENAWKSDIEYARQALAGLNPMTIQCLQTFPPSSALDPNIYGPQKSSITEQHIQKFLEGLSVQQAVASKRLFILDYYEAYMLYAERINKLSEGSKTYGSRTLFFLTNEGVLKPVAIELCLPPTAEQELGVRNVYTPAEEGTEEGALWLLEKAHARVNDAGYHQLISHWLRTHATIEPFIIATHRQLSRMHPVYKLLIPHYLDTMDINQAARQSLINARGIIEKSFTPHKYSMEMSSTI*

Protein Length: 399

Fln nts: GGAAAGTATATGATCGGATATACGATTATGATGTCTACAACGACATTGGGGACCCTGACAGCAGCCCAGAGCTGCTGAGACCAGTGTTGGGTGGATCCAACGACTTCCCATATCCTAGAAGATGCAGGACGGGTCGTCCACGATGTAAAACAGATCCCAATTCTGAAAGTCGAGCCAGTTCGATCTTCATTCCGCCGGACGAAAGGTTTCCTCATACGGATTTCACTGATTTTGGAGCCCACATCATCAATGCTTTCGCTAACTTGATTGTGCCTGAGATCACCGATGGAGCTGAAGCTGCCTTCAAAACATTCGAACAAATTGAACAGCTCTACGTTCAGGGATTTCAAAGTCCATATAACTCCGTCAGCAAACTTCTTCAGCACGAGAAGAATCCCCTTCAGATTATCAAGGGAATACTAGAAGCTGCCAAGGACAATCCACTGATAGATTTTGTGCGTCCTCAAGTTTATGCAGCTAATGAAAACGCGTGGAAGTCCGATATTGAGTATGCGCGGCAGGCGCTTGCTGGTTTAAATCCGATGACGATTCAATGCTTACAAACATTTCCCCCGTCCAGCGCCTTGGACCCAAATATCTACGGCCCACAGAAGAGTTCAATCACCGAGCAACACATACAAAAGTTCCTCGAAGGCCTTTCTGTGCAGCAGGCTGTTGCCTCAAAGAGGCTATTTATTCTGGACTACTATGAGGCATACATGCTCTATGCTGAACGCATCAATAAGCTATCGGAGGGAAGTAAGACATATGGCAGTCGCACACTTTTCTTCCTCACAAACGAGGGAGTGCTGAAGCCCGTGGCCATTGAATTGTGTTTGCCTCCAACCGCTGAACAGGAATTAGGTGTTAGAAACGTGTACACTCCGGCTGAGGAGGGAACAGAAGAAGGAGCGTTATGGTTGCTAGAAAAAGCTCATGCTCGTGTCAACGATGCGGGTTACCATCAATTGATTAGTCATTGGCTGAGAACTCACGCAACAATAGAGCCTTTTATTATAGCTACTCACAGACAACTAAGTAGAATGCATCCGGTGTACAAGCTATTGATACCTCATTATCTTGATACAATGGACATCAATCAAGCTGCACGTCAAAGCTTAATCAACGCGCGAGGAATTATTGAAAAAAGCTTTACTCCACACAAATACTCCATGGAGATGTCATCTACAATCTAATAAAGATTGGAGATTTAATGAGCAAGG

Fln Alignment:

sp_v1.1_unigene17408___KVYDRIYDYDVYNDIGDPDSSPELLRPVLGGSNDFPYPRRCRTGRPRCKTDPNSESRASSI---FIPPDERFPHTDFTDFGAHIINAFANLIVPEITDGAEAAFKTFEQIEQLYVQGFQSPYNSVSKLLQHEKNPLQIIKGILEAAKDNPLIDFVRPQVYAANENAWKSDIEYARQALAGLNPMTIQCLQTFPPSSALDPNIYGPQKSSITEQHIQKFLEGLSVQQAVASKRLFILDYYEAYMLYAERINKL-SEGSKTYGSRTLFFLTNEGVLKPVAIELCLPPTAEQELGVRNVYTPAEEGTEEGALWLLEKAHARVNDAGYHQLISHWLRTHATIEPFIIATHRQLSRMHPVYKLLIPHYLDTMDINQAARQSLINARGIIEKSFTPHKYSMEMSSTI
B8LLK5_______________KVSDRIYDYDVYNDIGEPGKSPELAREVLGGSKEFPYPRRCRTGRPPTKTDPKCESRVSFPNVNYIPPDERFPHTDFSDFGAHTLMAFANMIAPTIADLFEAAFETFEQIEHLYVRGFKSPINS-KKSLRQQPSPLQIVQGVLEAAEDNPLINFLRPQVLAVNELAWKTDREFARQALAGVNPLVIRCLETFPPSSSLDPNLYGPQKSTITEQHIKKFLDGLSLSQAVGSKRLFILDYYDPYMLYAERINKLSSDANKTYASRTLFFLTDEGELKPVAIELCLPPTADHK-AVRSVYTPGEEGTEEGALWRLARAHARVNDSGYHQLISHWLTTHAIMEPFIIATHRQLSKMHPLYKLLIPHYLNTMDINQAARQSLINADGVIELGFTPGKYSTEMSSKI

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
654	83		16		0.994512
663		20		80	0.995493
681		80	20		0.995493
691		80	20		0.995493
693	80		20		0.995493
699		40		60	1.0
714			80	20	0.995493
717	80		20		0.995493
720		80		20	0.995493
726		80	20		0.995493
732		20		80	0.995493
736	14	85			0.993533
739	85		14		0.993533
751			14	85	0.993533
759	33		33	33	1.0
765	33		66		1.0
792		80		20	0.995493
810		33	66		1.0
831	50		50		1.0
846	25	75			1.0
849		50		50	1.0
876		57		42	1.0
888			60	40	1.0
900	50		50		1.0
927	50		50		1.0
929	50	50			1.0
948		50	50		1.0
985		33		66	0.997452
998		66		33	0.997452
1007	66		33		0.997452
1040	33			66	0.997452
1056			66	33	0.997452
1061		33		66	0.997452
1065		33		66	0.997452
1091	33		66		0.997452
1112	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain