SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17404

Length: 566 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene17404
ATGGGGATAAAGCAAAGCAGCGGCCTTATCAAGAGGGGACTCTGAGAGGTAGTAGTGTGCTCGGGTTTTCCGTTTGATCCGCATGACCAAATCGCCATGGCTGCCAGTATGATGAGCTTCTATACGCCTCCGAATCGTGCATTGAATTTGAATCACTCTGATAAGGCCCGCGGAATGAGCAGCTTAAACACCAACTTCAGTGGCAGAATTCCCTTCAGAGTAAGTGCGCCTAAGGGCGTTTGCAGCTACAAGCCTTTGAAGGCCGTGATGATGGCAAAGAGGGAAGAGGAACTCAGAGAAATCAGAACAAAAGCAACTGAGCAACTCAATGAAGAAGTGATTGATCTCAAGGGAGAGCTTGTCATGTTGCGGATTAAGAAGACCACCAGACAGGAGCTAAAATCCAGCGAGTTCGGGCGATTGCAGAAAAGTATTGCACGGATGCTGACAGTACGAAGGGAAAGGGAGCTCGAGCAGGGTATTGGGAAACGGTTATCAAGAAAGATGGACCGCACATGGAAACTTAGCATCATTCCCAGGCCTCCTCCATCTCTGCGCAAGTTGCA

Ace file of the UniGene sp_v1.1_unigene17404

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L29 family protein	-	-	2.0e-35	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	50s ribosomal protein l29	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	81%
Blast2go	translation	GO:0006412	Biological Process	81%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	81%
Blast2go	ribosome	GO:0005840	Cellular Component	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	nucleoid	GO:0009295	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L29	IPR001854	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU9

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 156 - 174

Fln protein: MAASMMSFYTPPNRALNLNHSDKARGMSSLNTNFSGRIPFRVSAPKGVCSYKPLKAVMMAKREEELREIRTKATEQLNEEVIDLKGELVMLRIKKTTRQELKSSEFGRLQKSIARMLTVRRERELEQGIGKRLSRKMDRTWKLSIIPRPPPSLRKL

Protein Length: 157

Fln nts: ATGGGGATAAAGCAAAGCAGCGGCCTTATCAAGAGGGGACTCTGAGAGGTAGTAGTGTGCTCGGGTTTTCCGTTTGATCCGCATGACCAAATCGCC_-_ATGGCTGCCAGTATGATGAGCTTCTATACGCCTCCGAATCGTGCATTGAATTTGAATCACTCTGATAAGGCCCGCGGAATGAGCAGCTTAAACACCAACTTCAGTGGCAGAATTCCCTTCAGAGTAAGTGCGCCTAAGGGCGTTTGCAGCTACAAGCCTTTGAAGGCCGTGATGATGGCAAAGAGGGAAGAGGAACTCAGAGAAATCAGAACAAAAGCAACTGAGCAACTCAATGAAGAAGTGATTGATCTCAAGGGAGAGCTTGTCATGTTGCGGATTAAGAAGACCACCAGACAGGAGCTAAAATCCAGCGAGTTCGGGCGATTGCAGAAAAGTATTGCACGGATGCTGACAGTACGAAGGGAAAGGGAGCTCGAGCAGGGTATTGGGAAACGGTTATCAAGAAAGATGGACCGCACATGGAAACTTAGCATCATTCCCAGGCCTCCTCCATCTCTGCGCAAGTTGCA

Fln Alignment:

sp_v1.1_unigene17404___IAMAASMMSFYTPPNRALNLNHSDKARGMSSLNTNFSGRIPFRVSAPKGVCSYKPLKAVMMAKREEELREIRTKATEQLNEEVIDLKGELVMLRIKKTTRQELKSSEFGRLQKSIARMLTVRRERELEQGIGKRLSRKMDRTWKLSIIPRPPPSLRKL
A9NYU9_______________MTMAASVMSLNMPRNHALNLNLSAKARRMSSLNTNFSGRIPFRVSAPKGVCSYKPLKAVMMAKREEELKEIRTKTTEEINEEVIELKGELVMLRIKKATRQELKSSEFGRLRKRIARMLTVRREMELEQGIRKRLSRKMDRAWKRSIIPKPPPSLRKL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
384	71		28		1.0
435	80		20		0.995493
438			20	80	0.995493
452	25	75			0.996473
453	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain