SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17398

Length: 1783 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17398

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleic acid binding protein, putative	-	-	2.0e-30	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	nucleic acid binding	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of calcium ion transport	GO:0051928	Biological Process	66%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	66%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	66%
Blast2go	cytoplasm	GO:0005737	Cellular Component	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVP6

Fln msg:

Fln protein: MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNHDSNDNNRDNGHGGVPGPEGDGENNAYDSFQGLLALARLTSSTADEARGACKKCNRVGHLTFQCRNFLSGKEVEALQTVMEKENNNNNKFGGKDRVKLPKDAVAPLTGDSSDEDEEESESDVTDSDEDSEIERIIASRADKSSGKSKYRVNGRVSRVSSEKSRGPRVSSEKSSHVRISSEKSSHTRVSPEKSTISKSSSRKISSRKMKKRSRSVSESDDSEYYDDSHAQEKKMRKRRSSRKDYSDSSDASSDDDSDDDHDRKSRKKKRTRGSSDSSSEKARRRSKHSERKHRKHESRMRRVETDDDSSGSKDERRRYKHCKHGHKHGSRRSD*

Protein Length: 374

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTTGGTTTCTTGTTGTGAGCTAAATAACTTTGCATTCAGAAGGGTTTGGTTTAGGTATGTGACCGGAGGAGAGACTGGTTCGGCTCTCACCGAGTTTCGAATTCGCTGATGTGCCTTTGTGTCTCTGCGAAATTATCTTTCGTTTCTTTAACATAGCAGTCTTTGAGTATCAGAATCAGGGAAG_-_ATGCCGGCCACCGCGGGACGGGTGCGGATGCCCGCAAACAACAGGGTTCACAGCAGTGCAGCTCTTCAAACCCACGGCATCTGGCAGAGCGCCATCGGCTACGACCCCTACGCTCCCAACCACGACAGCAACGACAACAATAGAGACAACGGCCACGGGGGTGTTCCGGGGCCCGAAGGCGACGGAGAGAATAACGCCTACGACAGCTTTCAGGGCCTCCTGGCTTTGGCCCGGCTCACCTCCTCCACCGCTGACGAGGCTCGTGGCGCCTGCAAAAAGTGCAACAGGGTTGGACATTTAACATTTCAGTGCCGGAATTTTCTCAGCGGTAAAGAAGTGGAGGCTCTGCAGACGGTTATGGAAAAGGAGAATAATAACAACAATAAATTCGGCGGTAAAGATCGAGTGAAATTGCCCAAGGATGCCGTTGCTCCGCTGACCGGGGACAGTTCAGATGAAGACGAGGAAGAATCCGAATCTGATGTTACGGATAGTGACGAAGACTCTGAAATTGAGAGGATTATTGCGTCGAGGGCCGATAAAAGCTCCGGCAAGAGCAAGTACCGTGTAAATGGCAGGGTTTCTAGGGTTTCATCTGAGAAATCTAGGGGTCCTAGGGTTTCTTCTGAGAAATCTAGCCATGTCAGAATTTCATCTGAGAAATCTAGCCACACCAGAGTTTCACCTGAGAAATCTACGATTTCTAAGTCCTCATCTCGCAAAATATCGTCACGTAAGATGAAAAAGCGGTCCAGGAGTGTTTCGGAGTCTGACGACAGTGAATATTATGACGATTCTCATGCGCAAGAGAAAAAGATGAGGAAGCGAAGGAGCTCAAGGAAGGATTATTCTGATTCATCGGATGCTAGTAGTGATGATGATTCTGATGATGATCATGATCGGAAAAGCAGGAAGAAAAAGAGGACTCGAGGTTCGTCTGATAGCAGTTCCGAGAAAGCGAGGAGGAGGAGTAAACACTCAGAAAGGAAGCATAGGAAACATGAGAGCAGGATGCGTCGAGTGGAGACAGACGATGATTCGTCGGGCAGCAAAGATGAACGGAGGCGTTATAAGCATTGCAAGCATGGCCACAAGCATGGGTCCAGGAGAAGTGATTGA___GGTAAGACTTGACGTGGTCAGCAAAAACAAACAAGGGCACTCGGGACTGCATTACAATAGCATATCACTCTAGGCACGAGTTCTTAAACTATGCTTTAAATTGGCATAATTTTTAGTTGTTAGTTTCTTTATTTAAATGGATACTTGGCACTGTAATCCTGTCAACTCAAGTCCATAGTCATTTGATATTATTGTAATTGTCTTAAGTATGCCTCTTTCAAGGTATCACATCCTTGAAAAAGGGGAATGGTAGAATAATATCGGTTTGTCATAATGGTCTTATATATGTTTCATTGAAATAACAAAATCTTCAAAGTTTCCTTAGACTAATAACTTTCAGGTTTATTTATATTTCCTGTCCGAGCAGTTGATGCTTCGTCTGACTCTTTGCATCTTCAGACATTTTGAAATTCAGTTTTCTTCCTATCAAATATATTCTCTCACATGTTTTG

Fln Alignment:

sp_v1.1_unigene17398___MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNHDSNDNNRXXXXXXXXXXXXXXXXNAYDSFQGXXXXXXXXXXXXDEARGACKKCNRVGHLTFQCRNFLSGKEVEALQTVM-XXXXXXXXXFGGKDRVKLPKDAVAPLTGXXXXXXXXXXXXXXXXXXXXXXIERIIASRADKSSGKSKYRVNGRVSRVSSEKSRGPRVSSEKSSHVRISSEKSSHTRV
A9NVP6_______________MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNHDSNDNNRDNGHGGVTGPEGDGENNAYDSFQGLLALARLTSSTADEARGACKKCNRVGHLTFQCRNFLSGKEVEALQTVMEKENNNNNNKSGGKDRAKFPKDAVALLTGDSSEEDEEESESDVTDSDEDSEIERIIAARVGKSSSKSKSRVKDKGSRVHSQKSRVSRASSEKYRGHRVSSEKSSDPRV

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
76		15		84	0.999986
77	15		84		0.999986
78		15	84		0.999986
80		15	7	76	0.999983
81	15		7	76	0.999983
708		12		87	0.992554
776	42	57			1.0
828			54	45	1.0
931		80		20	0.995493
938		16		83	0.994512
939	83		16		0.994512
944		83	16		0.994512
947		14	85		0.993533
949	71	14		14	0.984337
950	71		14		0.984337
952	71	14			0.984337
955	83			16	0.994512
956	66	33			1.0
957	83	16			0.994512
958	66	16		16	0.988813
959	66			33	1.0
962	16		66	16	0.988813
966	16	83			0.994512
967	83	16			0.994512
968			83	16	0.994512
969		16	83		0.994512
978			83	16	0.994512
1644		90	10		0.90298
1653	12	87			0.992554
1658	87			12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
1172	1183	GAG GAG GAG GAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain