SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17389

Length: 681 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17389

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	galactosyltransferase family protein	-	-	4.0e-30	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	galactosyltransferase family protein	-	-	2.07071e-30	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactosylxylosylprotein 3-beta-galactosyltransferase.	EC:2.4.1.134	-	2.07071e-30	79%

Source	KEGGs	Term	e value	Identity
Blast2go	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	2.07071e-30	79%
Blast2go	Glycosaminoglycan biosynthesis - heparan sulfate	00534	2.07071e-30	79%
Blast2go	Metabolic pathways	01100	2.07071e-30	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	2.07071e-30	79%
Blast2go	galactosylxylosylprotein 3-beta-galactosyltransferase activity	GO:0047220	Molecular Function	2.07071e-30	79%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	2.07071e-30	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	2.07071e-30	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.07071e-30	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 31	IPR002659	-	2.07071e-30	79%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
210	85		14		0.993533
211			14	85	0.993533
282	87	12			0.992554
283	87		12		0.992554
286	12			87	0.992554
287	87	12			0.992554
288		14		85	0.993533
289			85	14	0.993533
292	85		14		0.993533
294	85			14	0.993533
295			14	85	0.993533
299	85			14	0.993533
300	85	14			0.993533
339			20	80	0.995493
344	20		80		0.995493
346	80	20			0.995493
348	80			20	0.995493
349			20	80	0.995493
350	80		20		0.995493
351		20		80	0.995493
353	80		20		0.995493
355		20	80		0.995493
356	20			80	0.995493
357	80	20			0.995493
432		77		22	0.999999
609		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain