SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17387

Length: 1053 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17387

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-like protein	-	-	3.0e-23	59%
FL-Next	tr=Ubiquitin family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	68%
Blast2go	ubiquitin family protein	-	-	3.26663e-28	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	3.26663e-28	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin	IPR000626	-	3.26663e-28	80%
Blast2go	Ubiquitin supergroup	IPR019955	-	3.26663e-28	80%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
157		33	66		1.0
158	33	33		33	0.997753
160	33		33	33	0.997753
163	33	33	33		0.997753
164	80			20	0.995493
165			60	40	1.0
166			60	20	0.99255
167		60	20		0.99255
168	20		40	40	1.0
169		60	40		1.0
172		20	80		0.995493
173	20		80		0.995493
174	20			80	0.995493
194	33	66			1.0
253		8	50	41	1.0
457	93	6			0.999264
639	23			76	1.0
682			57	42	1.0
730	63			36	1.0
802	20		79		1.0
840		26		68	1.0
886	70		30		1.0
901			22	77	0.999999
921	11			88	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain