SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17380

Length: 509 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17380
CGTCGTGACCTTGGCTGTCACTCAGCACTTAATTCGTTTCCTGAATGGTTACCCTCTGGCCTATCTGCATGTCACCGAACCACGGTTTACAAGGGAGGGCCTCAAGGAAGGTGATCCGCAGGAATCAGAGAAGATGACTGTAGAGATGTGGAGCACAGTGAGAGGGGAGTACGGAGGATTGCTGATGCGTAGCGGGGGATATGTAAGAGAAAGTGGAATGGAAGCCGTGTCCAAAGGCCATGCAGACCTGATATCCTTCGGCCGTCTATTCATTTCGAATCCAGACTTGCCTCTCAGATTCGCCATTGATGCCAAGCTCAACGAATTCGACAGATCCACATTCTACACTCATCATCAGGTTGCCGGTTACACTGATTACCCATTTTACATTAATTCTCTTACTGCGAATGCGACGCCTTATGAAATATAGATTTCAAAACCAATACAATTTTATAAATGTTGCTCATTCTATTGCGCGGATTCACTTTCTATTCTAATTAAGTCAAGAT

Ace file of the UniGene sp_v1.1_unigene17380

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	12-oxophytodienoate reductase 3 n=1 Tax=Solanum lycopersicum RepID=OPR3_SOLLC	-	-	3.0e-28	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	nadh:flavin oxidoreductase	-	-	1.9559e-28	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	12-oxophytodienoate reductase.	EC:1.3.1.42	-	1.9559e-28	67%

Source	KEGGs	Term	e value	Identity
Blast2go	alpha-Linolenic acid metabolism	00592	1.9559e-28	67%
Blast2go	Biosynthesis of plant hormones	01070	1.9559e-28	67%
Blast2go	Metabolic pathways	01100	1.9559e-28	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	1.9559e-28	67%
Blast2go	response to wounding	GO:0009611	Biological Process	1.9559e-28	67%
Blast2go	response to ozone	GO:0010193	Biological Process	1.9559e-28	67%
Blast2go	response to fungus	GO:0009620	Biological Process	1.9559e-28	67%
Blast2go	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	1.9559e-28	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	1.9559e-28	67%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	1.9559e-28	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P127

Fln msg: your sequence is shorter than subject: 143 - 376

Fln protein: VVTLAVTQHLIRFLNGYPLAYLHVTEPRFTREGLKEGDPQESEKMTVEMWSTVRGEYGGLLMRSGGYVRESGMEAVSKGHADLISFGRLFISNPDLPLRFAIDAKLNEFDRSTFYTHHQVAGYTDYPFYINSLTANATPYEI*

Protein Length: 144

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCACTTAATTCGTTTCCTGAATGGTTACCCTCTGGCCTATCTGCATGTCACCGAACCACGGTTTACAAGGGAGGGCCTCAAGGAAGGTGATCCGCAGGAATCAGAGAAGATGACTGTAGAGATGTGGAGCACAGTGAGAGGGGAGTACGGAGGATTGCTGATGCGTAGCGGGGGATATGTAAGAGAAAGTGGAATGGAAGCCGTGTCCAAAGGCCATGCAGACCTGATATCCTTCGGCCGTCTATTCATTTCGAATCCAGACTTGCCTCTCAGATTCGCCATTGATGCCAAGCTCAACGAATTCGACAGATCCACATTCTACACTCATCATCAGGTTGCCGGTTACACTGATTACCCATTTTACATTAATTCTCTTACTGCGAATGCGACGCCTTATGAAATATAG___ATTTCAAAACCAATACAATTTTATAAATGTTGCTCATTCTATTGCGCGGATTCACTTTCTATTCTAATTAAGTCAAGAT

Fln Alignment:

sp_v1.1_unigene17380___AVTQHLIRFLNGYPLAYLHVTEPRFTREGLKEGDPQESEKMTVEMWSTVRGEYGGLLMRSGGYVRESGMEAVSKGHADLISFGRLFISNPDLPLRFAIDAKLNEFDRSTFYTHHQVAGYTDYPF
A9P127_______________ALGLYMAEALNRYNILYAHYVEPRL----VTTFEPVATNKSLFPMRKAFKGSF----LVAGGYGREDGNEAISSGKADLVVYGRIFLANPDLPKRFELNAPLNKYDRNTFYSPDPVVGYTDYPF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
173	28		71		1.0
287		15		84	0.999986
327	11			88	0.923564
328		87		12	0.992554
331		87		12	0.992554
340	85			14	0.993533
348		85	14		0.993533
364		83		16	0.994512
367	20			80	0.995493
391		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain