SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17373

Length: 1615 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17373 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative ACT domain containing protein, ACR4, with alternative splicing forms [Oryza sativa Japonica Group] gb\|ABF96587.1\| ACT domain containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	75%
Blast2go	amino acid binding	GO:0016597	Molecular Function	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid-binding ACT	IPR002912	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADB5

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is shorter than subject: 365 - 439

Fln protein: FMDVFYVTDDNGQKLTDEGVIAYIEKTLATNPCILPSFGKSVGVEVAADQHTAIELTGKDRPGLLSEIFAVLSDLKCNVVEAEVWTHNRRVACLVYVTDEQTGAPIQEEQKICKIEELLRNVMRGNSNIRGAKAPVSMGFTHTERRLHQLMFADRDYEKLDGTGAMVPASLNDNAKLLVTVANCLERGYSVVNVQCKDRPKLLFDIVCTLTDMEYVVFHAIIDSQGPQTCQEYFIKHADGCPVNSEAERRRVIHCLEAAIRRRASEGVRLELCTNDRVGLLSDVTRIFRENGMSVTKAEVTTRGDKAVNVFYVTDAAGNPVDPRTVEAVRREIGLTILQVKDNCMHTKSPPREPAIPFSFGQSF*

Protein Length: 366

Fln nts: TTCATGGACGTATTCTATGTCACAGACGATAATGGCCAAAAACTTACAGACGAAGGGGTAATTGCGTACATTGAGAAGACGTTGGCAACAAACCCTTGCATTCTGCCTTCATTTGGGAAATCAGTGGGCGTGGAGGTAGCAGCTGATCAACATACAGCAATTGAATTAACAGGCAAGGACCGACCGGGGTTACTGTCTGAAATATTTGCAGTTCTCAGTGACCTAAAATGTAACGTTGTGGAGGCGGAGGTGTGGACTCACAACAGGAGGGTTGCCTGTCTTGTTTATGTAACTGATGAGCAGACAGGTGCTCCCATCCAAGAAGAGCAAAAGATTTGCAAAATTGAAGAGCTATTGCGAAATGTAATGAGAGGAAACAGCAACATTCGAGGTGCTAAAGCGCCGGTGTCAATGGGATTCACTCATACAGAGAGACGGCTGCATCAATTGATGTTTGCTGACCGCGACTATGAGAAACTGGACGGAACTGGAGCCATGGTACCTGCTTCCCTCAACGACAACGCCAAACTTCTTGTGACTGTTGCCAACTGTTTGGAAAGGGGGTATTCTGTGGTGAATGTTCAATGTAAAGACAGGCCTAAGCTCCTCTTTGATATTGTTTGCACCTTGACGGATATGGAGTATGTTGTCTTTCATGCCATTATAGACTCTCAAGGCCCACAAACTTGCCAGGAGTACTTCATCAAGCATGCTGATGGATGCCCTGTGAATTCAGAAGCAGAGAGGCGACGAGTGATTCATTGTTTGGAGGCTGCCATTAGAAGAAGAGCATCAGAGGGCGTGAGATTGGAACTCTGCACCAACGATCGAGTTGGGCTTCTGTCAGATGTGACTCGGATATTTAGAGAAAATGGGATGTCTGTTACAAAAGCAGAGGTCACAACGAGGGGTGATAAGGCTGTGAATGTGTTCTATGTGACTGATGCAGCTGGAAACCCTGTTGATCCGAGGACTGTAGAAGCTGTTCGTCGAGAAATCGGACTAACGATATTGCAAGTAAAAGACAACTGTATGCATACCAAATCTCCTCCGAGGGAACCTGCCATTCCCTTCTCCTTTGGTCAATCTTTTTAA___ATCAAAGTCAGAGCGCTTCCTCTACAGTCTTGGATTGATCAAATCCTATTCCTAAATAGTTGATCCACCTCATATGTATATAATTACTGGTAGGTGGAAAGGGCAATAGACCTGTAATTTTCGGTTCTATCTATAGTGGTGCAACAAATTTTGTTGGTCAGTGTATATTACTCGACATTGTAAAGAATTAGGGAAAACAGTATACACACCTTCCATTTAGCTTTTCATCTGTAAACAGTGGAAGGAATGATAGTTTGAAACATGGATTAGCACATTGTTTTGATGGTTCAGAATTTAGAAAAGGGATCATGGATGGTCGTCCTCATCCTCCTTGTAAGGATAGGCTTTGGCAAAATTAATTGGGGGATGGATGCGTGCCCAGAAGATTCAGATGCAGGAACGCGTTACGCGATGATTTGTGGTCTGACACCCCTATATTTCTTTGTACAATACTTGCTAAATCATGTGCACTTGAGGCAGTGCATATTATATTGTACATAATTGACTCTTTTTTCAATTT

Fln Alignment:

sp_v1.1_unigene17373___FMDVFYVTDDNGQKLTDEGVIAYIEKTLATNPCILPSFGKSVGVEVAADQHTAIELTGKDRPGLLSEIFAVLSDLKCNVVEAEVWTHNRRVACLVYVTDEQTGAPXXXXXXXXXXXELLRNVMRGNSNIRGAKAPVSMGFTHTERRLHQLMFADRDYEKLDGTGAMVPASLNDN--AKLLVTVANCLERGYSVVNVQCKDRPKLLFDIVCTLTDMEYVVFHAIIDSQGPQTCQEYFIKHADGCPVNSEAERRRVIHCLEAAIRRRASEGVRLELCTNDRVGLLSDVTRIFRENGMSVTKAEVTTRGDKAVNVFYVTDAAGNPVDPRTVEAVRREIGLTILQVKDNCMHTKSPPREPAIPFSFGQSF
D5ADB5_______________FMDVFYVTDENGKKLTDEGVIGYIEKTLETNPCILPSFGKSVGVEVAADQHTAIELTGTDRPGLLSEIFAVLSDLKCNVVEAEVWTHNRRVACLVYVTDEETGAPIDDGQKICKIEELLRNVMRGNSNIRGAKTVASMGLTHTERRLHQLMFADRDYEKLDGTVGRAPPPLNDNDNAKPHVTVENCLERGYSVVNVQCKDRPKLLFDVVCTLTDMEYVVFHATIDSQGPQTHQEYYIRHTDGCPVNSEAERQRVIQCLEAAIRRRASEGVRLELCTNDRVGLLSDVTRIFRENGMSVTRAEVSTRGDKAVNVFYVTDAAGNPVDPKTVEAVRREIGLTILQVKDNCMDTKSPRREPAIPFSFGNLF

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
207	20			80	0.995493
439			11	88	0.999952
443		11	5	83	0.999887
447			11	88	0.999952
449		12		87	0.999964
496	15		84		0.999986
534		50	50		1.0
535		50		50	1.0
536	50		50		1.0
538	50	50			1.0
539	50		50		1.0
541	50	50			1.0
542		50	50		1.0
547			50	50	1.0
548	50	50			1.0
550		50		50	1.0
552	50		50		1.0
744		25		75	0.996473
745		25		75	0.996473
746	25			75	0.996473
904	20	80			0.995493
905	80		20		0.995493
907	20		80		0.995493
909		20		80	0.995493
910			20	80	0.995493
914		20	80		0.995493
915	80			20	0.995493
1181		33		66	0.997452
1422		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain