SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17367

Length: 1258 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17367 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytidine/deoxycytidylate deaminase family protein n=3 Tax=Arabidopsis RepID=Q1PEH3_ARATH	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	cytidine deoxycytidylate deaminase family protein	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	dCMP deaminase.	EC:3.5.4.12	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	85%
Blast2go	Metabolic pathways	01100		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	dCMP deaminase activity	GO:0004132	Molecular Function	85%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	85%
Blast2go	endomembrane system	GO:0012505	Cellular Component	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	85%

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
129		16		83	0.994512
219		83		16	0.994512
332	80			20	0.995493
335	80			20	0.995493
340		20	80		0.995493
343		80	20		0.995493
346		20	80		0.995493
347	20			80	0.995493
348		20	80		0.995493
349		80	20		0.995493
351		20		80	0.995493
376	66			33	0.997452
378	33			66	0.997452
381	66	33			0.997452
830	90			10	0.90298
831			10	90	0.90298
833	90		10		0.90298
834		10		90	0.90298
837			10	90	0.90298
840	12	87			0.992554
844	87			12	0.992554
847	85	14			0.993533
852		85	14		0.993533
890	57		42		1.0
908	11		88		0.923564
1189		70		30	1.0
1230			88	11	0.923564
1233			88	11	0.923564
1236		75		25	1.0
1237		75	25		1.0
1238	37	50			1.0
1239	25	50	25		1.0
1240	50			50	1.0
1241			25	75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain