SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17354

Length: 1433 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17354

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF538 domain containing protein	-	-	5.0e-22	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	unknown [Pinus pinaster]	-	-	1.87509e-22	87%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ66

Fln msg: Distance to subject end: 28 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 85 - 146

Fln protein: VFPRAVLPLEEIEECGYVRETGFVWLKQKKKIEHQFKKIGKTVQYGAEISAYVEQHKMKKLTGVKSKELILWITICEVSIDDPLS

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCGCGTGAAAGGTGGGTTGGTAATTGAGTTGGTTTTTCGGGTTTGCCTCAAGAATGGCCTTGGGTCGTTTGTAGGGTGCTCGATTTTCATCTTCTCCCCATACCCACTCGGTAGCGCATGAGCGGTAATGTTGGCCATGCTTGTCCTAGGAGGCATATGTGAACAATTCCCCTTCTGCTCCAGGTCTTGCGAGTTGTATGGGTTGTTGTGGTGTGGCTCCTTGTGATGGCTAGCCTCTTCAATGTTCGGCTGTTTATGGTGCCGGCGTCTTGTGCTTGTACTCTTTCCGTGTTGGCATTGTCGGTTGAGATGCATACATTTAAGAGGGACGTGGTAGGGTGTTGGTTGTAAACCACCTACCCTCCCTCTTGCTTGCCTTTTCTGTCGGGCGATGTGAGGCGCTGTTTTCCTTGTTGTAAAGTCAAGGGTTGGCATTCCCTTCAAAGTGCACATCGTTCGTGGTTGCGTTGGCTTTGAGGTTTTGATAGATGTGTTGGCCCATATGTTTGATCAAGGGGTTGGCTTTTCCCTTGCTTCTTGCGTGCATGGCGGGCTTTTTGCGGTTGGAAATGTTAAGTCACAACGTTTATGGGCATCTGTTGTTTCAATTGTGTATGTGCGCTTCTCGTCCAATGGGGAGGAGGCTTGCTATGTCGATGGTGGTTGCTATCTGGAATAAGGATTTCGAGGTGGAACGCTTCGACCTCCCTCCTTTGCGTGGAGGTGGCCGTAGGGGAGAATTATTGATCGTCGGGACGGCAAAGCTGTGGGAAATCTCTCTCCTAGGTTGCCTGTACGTAGGGTGCGTGGGGTGCGGAGCTGCCCGATCCCTCCTCCTCCTGTTCGGATATGTGCTCTTGTATTGTGTAGCGACCCTCTTGATTTGCACTTATTTCCTTCCTTTGCCTTCGCATCGTGGTTTGCCGCAGCGGTCAAGTGATCGAGTACCGCCTGGCCTATATGGCCTCGGTGCGTGGCGTGGAGGGGCGGGGGGCATTTTTGAGAGAGGTTGTGGGCTCGGTTGGTCGCTGGAAGAAGGATTTCGAGGTGGAACGCTTCGACCTCCCTCCTTTGCGTGGAGGTGGCCGTAGGGGAGAATTATTCATCGTCGGGACGGTAAAGCAGTGGGAAATCTCCTAGGTTGGCTGTAGGTCTTCCCAAGGGCCGTGTTGCCCCTTGAGGAGATTGAAGAATGTGGATATGTGAGGGAAACTGGCTTTGTGTGGCTCAAGCAGAAGAAGAAGATTGAGCACCAGTTCAAAAAGATTGGGAAAACAGTCCAGTATGGTGCAGAGATCAGTGCCTATGTTGAGCAACACAAGATGAAGAAGCTGACTGGTGTGAAGAGCAAGGAGCTGATCCTTTGGATCACCATCTGTGAGGTGTCCATTGATGACCCATTAAGTG

Fln Alignment:

sp_v1.1_unigene17354___PRAVLPLEEIEECGYVRETGFVWLXXXXXXXXXXXXXXXTVQYGAEISAYVEQHKMKKLTGVKSKELILWITICEVSIDDPLS
A9NQ66_______________PTGLLPLDELEETGYVKETGFVWLKQKKKTEHQFKKIGKMVQYGTEITAYVEQRKMKKLTGVKSKELFLWITICEISIDDPSS

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
26	10			90	0.90298
34	90		10		0.90298
369	11			88	0.923564
407	33			66	1.0
408		88		11	0.923564
409		11		88	0.923564
447	11		88		0.923564
499	10			90	0.90298
501			10	90	0.90298
503	90		10		0.90298
647		25	75		0.996473
650		25		75	0.996473
660		33		66	0.997452
662	33		33		0.997753
667		33	66		0.997452
670		33	66		0.997452
672	33			66	0.997452
673	33			66	0.997452
675		66	33		0.997452
678		33		66	0.997452
680	33			66	0.997452
682	33		66		0.997452
850		90		10	0.90298
863		90		10	0.90298
881		40	60		1.0
888	60		40		1.0
928		12		87	0.992554
936		50		50	1.0
1042	33	66			0.997452
1044		66	33		0.997452
1045			33	66	0.997452
1219	88		11		0.923564
1221			88	11	0.923564
1222		11	11	77	0.968132
1232	81		18		0.999994
1262	85		15		1.0
1263	90		10		0.999898
1372	14		82		1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
856	867	CCT CCT CCT CCT	12
1260	1271	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain