SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17349

Length: 978 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17349

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cation transport protein chaC, putative n=1 Tax=Ricinus communis RepID=B9RJ74_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ChaC-like protein	IPR006840	-	0.0	80%
Blast2go	Butirosin biosynthesis, BtrG-like	IPR013024	-	0.0	80%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
71		33	66		0.997452
82	25			75	0.996473
87			25	75	0.996473
125		25		75	0.996473
234	90		10		0.90298
275			90	10	0.90298
353			87	12	0.992554
772	83	16			1.0
884		12		87	0.992554
907	75		25		0.996473
962	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain