SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17308

Length: 1646 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17308

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic translation initiation factor 4e type, putative; K03259 translation initiation factor eIF-4E	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	cap-binding protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	87%
Blast2go	RNA binding	GO:0003723	Molecular Function	87%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	87%
Blast2go	cytoplasm	GO:0005737	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P259

Fln msg: your sequence is longer than subject: 278 - 245

Fln protein: MGIAKRPAGAKHRSRLLEQTPNSAEKSETIPSMELSEKSDGRGLVRTPSRPELIPNDRPPLLPLTAEMINKEKDDRARREREAEERERQSRELKAGLHPLQHRFVFWYLRRQPGVRSQASYEENMKKIVEFSTVEGFWVCYCHFARVSSMPNPTNLHLFKEGLRPLWEDPGNRNGGKWIIRLNKAVSGRFWEDLVLALVGDQLDYGDDVCGIVLSVRFGEDILSVWNRNASDGQAVMVLRDSIKKHLHLPASYLMEYKPHDAALRDNSSYRNTWLRG*

Protein Length: 279

Fln nts: CGTCGTGACCTTGGCTGTC_-_ATGGGGATTGCAAAGCGGCCAGCTGGAGCGAAACACCGAAGTCGATTGCTAGAACAAACCCCCAATTCGGCAGAGAAATCTGAAACCATACCATCAATGGAGCTTTCAGAAAAATCCGATGGCAGAGGACTTGTAAGGACTCCATCTCGTCCTGAATTGATACCGAACGACCGCCCGCCGTTGTTGCCCCTCACTGCAGAAATGATCAACAAGGAAAAAGACGACAGAGCACGACGCGAGAGAGAAGCAGAAGAAAGGGAACGCCAAAGCAGAGAGCTCAAAGCCGGACTCCATCCTTTACAGCATCGATTTGTTTTCTGGTACCTTCGTCGACAACCTGGAGTTAGATCACAAGCATCATATGAGGAAAACATGAAAAAAATTGTGGAGTTCAGCACTGTGGAAGGCTTTTGGGTTTGCTATTGCCATTTTGCTCGGGTTTCTTCTATGCCAAACCCAACAAATTTGCACCTTTTCAAAGAGGGTCTTCGACCTTTATGGGAGGACCCAGGAAATCGTAATGGTGGGAAGTGGATAATTCGGCTGAATAAGGCTGTCTCAGGCAGGTTTTGGGAAGACTTGGTACTAGCGCTGGTAGGCGATCAGCTGGATTATGGTGATGATGTATGTGGTATTGTATTGAGTGTTCGCTTTGGGGAGGACATTCTCAGTGTTTGGAATAGAAATGCTTCTGATGGCCAGGCAGTAATGGTATTGAGAGATTCAATCAAGAAACATCTTCACCTTCCTGCCAGCTACCTGATGGAGTACAAGCCACACGATGCAGCATTACGAGATAATTCGTCATACAGAAACACTTGGTTGAGGGGATGA___TTGAGGTGTTCAGCATGCTGTTAAATTATTGACGTTCTGTATCATCAGTACTCTAGTCATTTCAGTTTTTCAGAAGTGTAGGGGAGTGTTCAAGTTCTCCTCAAATCTGTATCATGTTGATGTATAATCTTGCAGAGCAGCATGTGTTTCTTTGGGTCACATCAATCGTATTCATCATTGCATACTGCCAAACGCTGGATCACAATCTGAAATTTTCATGTCTCATTTTCCTAACCATTTAGTTTCTAATTGCTGGTCCATGTGGCACTAAAGCTTTAGTCATGAAAGCAACTTATGATCCAGAGGTACAAAGTTCAAACATGGTAGTATTTTCCTGGAAGATACATTGACTATTACTGGTAAGGCGAGCTACATAGAGATCATGGGCAGTGATAGGCACAGAGGTCTTTCAAAATCCGAATGAAAACTAACTAGATTTTCAACTACATACTCTGCAGACATTAAACTCGGTTGTATTTTGAAATTGAACTTCTTAATTGTTTAGATAATTCGGAGAATATCTTAACAAAGAATGCAGTATTTGTGTCACAAAGGTGGCTTAATGCAATTTGAGACCGAACCTTCAGAAACACTGAAATCACATGTTTTGCAATTTCATTCTTGCATAAAACTGGCCAACTATTATTATTGGCTATTACTTGTTTGCTATGGATATGAATTTTGGTGAAATCTGATTGCAATGGACCAAGATCCATGATTGATATTTGTTTACTTATTTGCTATGGATATGAATTGATGAAATCTGATTGCAACTGGACGAGATCCATGATTG

Fln Alignment:

sp_v1.1_unigene17308___MELSEKSDGRGLVRTPSRPELIPNDRPPLLPLTAEMINXXXXXXXXXXXXXXXXXXQSRELKAGLHPLQHRFVFWYLRRQPGVRSQASYEENMKKIVEFSTVEGFWVCYCHFARVSSMPNPTNLHLFKEGLRPLWEDPGNRNGGKWIIRLNKAVSGRFWEDLVLALVGDQLDYGDDVCGIVLSVRFGEDILSVWNRNASDGQAVMVLRDSIKKHLHLPASYLMEYKPHDAALRDNSSYRNTWLRG
A9P259_______________MELSEKSDGRGLVRTPSRPELIPNERPPLLPLTAEMINKEKEDRARREKEAEERERHSRELRAGLHPLQHRFVFWYLRRQPGVRSQASYEENMKKIVEFSTVEGFWVCYCHFARVSSMPNPTNLHLFKEGIRPLWEDPGNRSGGKWIIRLNKAVSGRFWEDLVLAMVGDQLDYGDDVCGIVLSVRFGEDILSVWNRNASDGQAVMVLRDSIKKHLHLPASYLMEYKPHDAALRDNSSYRNTWLRG

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
239	85		14		0.993533
240	14		85		0.993533
257		42		57	1.0
303			85	14	0.993533
332			20	80	0.995493
333			80	20	0.995493
352	25		75		0.996473
516		85		14	0.993533
517			14	85	0.993533
520		14		85	0.993533
522			85	14	0.993533
525		14	85		0.993533
526			85	14	0.993533
527	85			14	0.993533
528		85	14		0.993533
529		85	14		0.993533
531	85			14	0.993533
533			85	14	0.993533
534	85	14			0.993533
536	85	14			0.993533
720		42		57	1.0
925		20		80	0.995493
926		80		20	0.995493
979	80		20		0.995493
981	80		20		0.995493
983		20		80	0.995493
989	80			20	0.995493
992			80	20	0.995493
997	75			25	0.996473
998		25		75	0.996473
999	25		75		0.996473
1099		20		80	0.995493
1152		11	88		0.923564
1153	88		11		0.923564
1156		87	12		0.992554
1157	87			12	0.992554
1160		12	87		0.992554
1161		12	87		0.992554
1163	87			12	0.992554
1164		87	12		0.992554
1165	75		12		0.975346
1166	87	12			0.992554
1167	87			12	0.992554
1173	87	12			0.992554
1174	87			12	0.992554
1481	88	11			0.923564
1513	75		25		1.0
1541	11	11		77	0.968132
1542	12		87		0.992554
1543	85	14			0.993533
1544	85		14		0.993533
1576	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain