SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17305

Length: 1189 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17305

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	endonuclease, putative	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	endonuclease activity	GO:0004519	Molecular Function	0.0	79%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2M7

Fln msg:

Fln protein: MGNERFKTAAPSPSSWPDESSSIEHGVQSRPLQSPRKPWRKKSAAATSRRTVIETAGIDDDEEVVGEESSEYNPRSFPYHIKQACWEKAEKIKGRDPDRWRRDPLGNVVFRKLVGCSGCLCHDYDHIHPYSKGGKSTVENCQVLQGAANRAKSNHTHISTADLIQKSAYCRVSGREMDFLELSAYGNVHRGQESGGCRIQ*

Protein Length: 202

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTTTCCCTAAGTTCCAACCACTTTTAACTGCCGAGGCAATTCGTCGGCCTTGTTAAACGACTCCTTTTCACAATAAATATCCACTATGCGTTTTCATTCCCGCGCTTCTCGCGGCAAAATGTCATACCCACGGAGGCCATGCGCGGCCTCGTGTGACCACTCCTAACCCTGTATCCCTCATCTGAACGATTGTAACCTCTGTTCTGCCCAAAGC_-_ATGGGCAACGAAAGGTTCAAAACTGCGGCCCCTTCACCGTCGTCTTGGCCTGATGAATCATCATCAATAGAACACGGGGTCCAATCCCGCCCCTTACAATCTCCACGCAAACCCTGGAGGAAGAAGAGTGCGGCTGCTACATCTCGGCGGACGGTAATTGAGACAGCAGGCATTGATGATGATGAGGAGGTTGTCGGAGAAGAGTCGTCGGAGTACAATCCGAGATCATTTCCCTACCACATAAAGCAGGCTTGCTGGGAAAAAGCCGAGAAAATTAAGGGCAGGGACCCCGACAGATGGCGCCGCGACCCCCTCGGCAACGTTGTCTTTCGCAAGCTCGTTGGCTGCTCTGGTTGCCTATGCCACGACTACGATCACATACATCCTTATTCCAAGGGCGGTAAGAGTACCGTGGAAAATTGCCAGGTTCTGCAGGGAGCCGCTAATCGGGCAAAGAGTAATCATACTCATATCTCAACTGCAGACTTGATTCAAAAGAGTGCTTACTGCCGAGTTTCAGGAAGAGAGATGGATTTCCTAGAACTTTCAGCCTATGGCAATGTGCACCGTGGGCAAGAATCAGGAGGCTGCAGAATACAGTAG___AATTTAGGTTTATCCTCTGCAACAGCTCTTTCATCTGGATAATTTGTACTTTATCACAAGCTAGCCTGTTCTGGATACCGAGACATAGCATCCATACATCTCTAAATAATTTCAGGTCAAGACTTGCTTTACTTTTGGCAAAATTCTTCTATCATTATTATTTAATACATGCAAGTCCATACTTATATTTATAAGAGAGCTCAGGTCGATTGGAAATCTTATGACTAATTACATATTAATTAACTCAAGTCCAACAACTGTTTTATTGTTTCATGAGCGGGGAAATACGAGTCTCCAACACGAGAAATGTTATCCCCGGAAACAGGTTATGGAGGACACTCGGT

Fln Alignment:

sp_v1.1_unigene17305___MGNERFKTAAXXXXXXXXXXXXIEHGVQSRPLQSPRKPWRKKSAAATSRRTVIETAGIXXXXXXXXXXXXXYNPRSFPYHIKQACWEKAEKIKGRDPDRWRRDPLGNVVFRKLVGCSGCLCHDYDHIHPYSKGGKSTVENCQVLQGAANRAKSNHTHISTADLIQKSAYCRVSGREMDFLELSAYGNVHRGQESGGCRIQ
A9P2M7_______________MGNERVKAAAPSPSSWHEESSSLDHGIQSRPPQSPRKPWRKKSAAATARRTVIETAGIDEEEQVVGEESSEYNPRAFPYHIKQACWEKADKIKGRDPDRWRRDALGNTVFRKLVGCSGCLCHDYDHIHPYSKGGKSTVENCQVLQGAANRAKSNHTDMSTTDLIQKSAYCRVSGRDMDFLELSAYGNVHRGQESGGCRIQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
545	10	90			0.90298
547	10		90		0.90298
548		90	10		0.90298
550	90	10			0.90298
564			88	11	0.923564
1034	11			88	0.923564
1036	87			12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
416	427	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain