SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17289

Length: 1385 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17289

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GATL4 (Galacturonosyltransferase-like 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] sp\|Q9M8J2.1\|GATL4_ARATH RecName: Full=Probable galac	-	-	2.0e-11	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	protein	-	-	0.0	49%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	49%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU2

Fln msg: Overlapping hits, possible frame ERROR between 282 and 237,

Fln protein: MSEFNAHLSARGASRRSTATSSTSGKHSAPGRLHIDIDDPPEPWRFAPFIALMLMxxxxxxxxxxxxxxxxxDSKRVWKSFSPDLTAVNQTVTHISTQSEPLEDVHIFSWSDDLDLRPLAVLVNSTISNTRNPGNIYFYLSIPDDWEEELAHSRFKVLFPKSNIFIHRHSVIRKKVLASGGEDSRSDFPYVLPFYIPKTFQNLRRFIYLVPDIVVKGKVEELFRVNLTNTPVAAVEDCSNNFEHVNAKSSRPSMTQTPNGKNTCILDFSVLLVNAELFTNKKFIEVTKLWRKGLDAEGERDGGSDQEIMLALDGNYAKLDASWNRRESRFSGIGSDVKIFHFDGEKKPWLKQAEDSIDTNMTKIWRDYLSQGADVLLRQPNIL*

Protein Length: 385

Fln nts: CGTCGTGACCATGGCAGGATTCGAACCAACCCTGTTTTCTTTGCTCTAGCAAGCCTGAAAACTTTCACT_-_ATGTCAGAATTCAATGCCCATTTGAGCGCAAGAGGAGCCTCAAGGCGGAGCACTGCAACATCTTCAACGTCAGGGAAACATTCTGCACCAGGGCGTCTGCATATTGATATAGATGACCCTCCAGAGCCATGGCGATTTGCACCGTTTATAGCCCTCATGTTAATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGACTCCAAACGCGTATGGAAATCCTTTAGTCCGGACCTTACAGCGGTAAATCAAACCGTAACACATATTTCAACGCAATCAGAACCACTTGAAGATGTTCACATATTTTCCTGGTCGGATGATTTGGATCTTCGCCCGCTAGCGGTTCTTGTGAATTCCACTATTTCTAACACGAGGAATCCTGGAAATATATATTTTTACCTTTCGATACCTGATGATTGGGAAGAAGAGCTCGCTCACTCTAGATTTAAGGTGTTATTTCCAAAATCAAATATTTTCATCCACAGACATAGTGTTATCAGAAAAAAGGTTTTGGCATCTGGCGGTGAAGATAGTAGATCAGATTTTCCATATGTTTTGCCATTCTACATACCTAAAACCTTTCAAAATCTCAGAAGGTTTATATACTTAGTTCCAGACATCGTTGTGAAGGGTAAGGTTGAGGAGCTTTTTCGAGTCAATTTAACAAATACTCCTGTTGCCGCTGTTGAAGATTGTTCCAACAATTTTGAGCATGTGAATGCAAAAAGCTCTAGGCCTTCGATGACTCAAACACCAAATGGAAAGAACACATGTATCCTTGATTTCAGTGTGCTTTTAGTTAATGCTGAACTTTTCACAAATAAAAAATTTATTGAGGTGACTAAGTTGTGGAGGAAAGGGCTTGATGCAGAAGGTGAACGAGATGGTGGGTCAGATCAGGAAATTATGTTAGCACTTGATGGAAATTACGCCAAACTTGACGCCTCTTGGAATAGAAGGGAATCTAGATTTTCTGGGATTGGCAGTGATGTGAAAATCTTTCACTTTGATGGAGAGAAGAAGCCATGGTTAAAACAAGCCGAAGACAGCATAGACACCAATATGACTAAAATTTGGCGGGATTACCTCTCTCAAGGAGCAGATGTTCTATTGAGACAGCCAAATATATTATAA___TTTTGAATAATGAAAAACTCTCAGAGAATTCAGTAAAACAGGGTGCGGTTTGTATGTCTGCAATATGGGTATTGTGTATATTCCAGGACTTATATTATGAATTAGCTACTAAGGCTAGAATATGGTTAGAGACTTCCTTGTACCTTTAAAAAACCATCAATTTGG

Fln Alignment:

sp_v1.1_unigene17289___MSEFNAHLXXXXXXXXXXXXXXXXXKHSAPGRLHIDIDDPPEPWRFAPFIALMLM-NxxxxxxxxxxxxxxxFDSKRVWKSFSPDLTAVNQTVTHISTQSEPLEDVHIFSWSDDLDLRPLAVLVNSTISNTRNPGNIYFYLSIPDDWEEELAHSRFKVLFPKSNIFIHRHSVIRKKVLASGGEDSRSDFPYVLPFYIPKTFQNLRRFIYLVPDIVVKGKVEELFRVNLTNTPVAAVEDCSNNFEHVNAKSSRPSMTQTPNGKNTCILDFSVLLVNAELFTNKKFIEVTKLWRKGLDAEGERDGGSDQEIMLALDGNYAKLDASWNRRESRFSGIGSDVKIFHFDGEKKPWLKQAEDSIDTNMTKIWRDYLSQGADVLLRQP
A9NYU2_______________MSEFNAHISTRRATRRSSATSSTSSKNSAPGPLHIDIDEAPKPWRFAPLIALLIMIIxxxxxxxxxxxxxxxFDSHRQWRSITPDVLTANRTITHIPMQAKPLEHVHIFSWSDDLDLRPLAVLVNSTISNSRDPGNIYFYLFIPDDWEEERSRSIFSLLFRKSNIFIYRHSVIREKAFASGGEDSKSDFPYFLPFYIPKIYQNLRRFIYAVPDIIVKGKVEELFQVNLTNSPVAAVEDCSHNFEYINAKSSRPWVAQTPYAKNTCILDHSVLLVNVELLAKENFMEVTK-WKK-LFHTGGRNDQSDQAIMLALNGNYTKLDASWNSRESRFSGIDSDVKIFHFDGEKKPWLKQAEGRRHTNMTKIWWDYLSLTADHLLRQP

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
707	85			14	0.993533
708		85		14	0.993533
713		14		85	0.993533
714	14			85	0.993533
721			85	14	0.993533
723	14			85	0.993533
724	85	14			0.993533
728		14		85	0.993533
729		14		85	0.993533
803		66		33	0.997452
821	10			90	0.90298
865	10			90	0.90298
869	10	90			0.90298
870	10			90	0.90298
871			10	90	0.90298
876	10			90	0.90298
883			87	12	0.992554
927	87	12			0.992554
928			87	12	0.992554
931		11	88		0.923564
935	88	11			0.923564
974		10	90		0.90298
975	90		10		0.90298
977		10	90		0.90298
982	10		90		0.90298
983		10		90	0.90298
985	90			10	0.90298
986		23	69	7	1.0
987	69		30		1.0
990	69		23	7	1.0
991			76	23	1.0
995	76	23			1.0
996	69	7		23	1.0
998		7	23		1.0
999	7		23	69	1.0
1000	76	23			1.0
1004		23		76	1.0
1007			76	23	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain