SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17286

Length: 489 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17286
CGTCGTGACCTTGGCTGTCACTCTTTTTGGAAGTGAGCCCAAGTGGAGCGAGAAGGCAAGCAAGCACTTGCAGGCTCCAGTAGCGGCGGCAGGAGGAGATCCGGAAGGATTATATACGTGAACATGGTGAGGATTAGTGTTTTGAACGATGCACTTAGGAGCATGTATAATGCAGAAAAGCGTGGGAAGCGGCAAGTGATGATCAGACCATCATCAAAAGTCATCATCAAGTTCCTCCAAGTCATGCAAAAGCATGGTTATATTGGAGAGTTTGAGCTAGTTGATGATCATAGAGCAGGGAAAATTGTTGTCGAGCTTAATGGAAGGCTCAACAAATGTGGAGTTATCAGTCCTCGTTTTAATATCGGGGTGAAAGAAATTGAGTCATGGACTGCTCGCCTGCTACCCTCCCGACAGTTTGGATTCATTGTTTTGACAACATCTGCTGGCATCATGGATCATGATGAAGCCAGGAGAAAGAATGCTGGA

Ace file of the UniGene sp_v1.1_unigene17286

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein S15A (Rps15a)	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	96%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%
Blast2go	cell wall	GO:0005618	Cellular Component	96%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	96%
Blast2go	mitochondrion	GO:0005739	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S8	IPR000630	-	0.0	96%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN71

Fln msg: STOP codon was not found. Distance to subject end: 8 aas,

Fln protein: MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAG

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCTTTTTGGAAGTGAGCCCAAGTGGAGCGAGAAGGCAAGCAAGCACTTGCAGGCTCCAGTAGCGGCGGCAGGAGGAGATCCGGAAGGATTATATACGTGAAC_-_ATGGTGAGGATTAGTGTTTTGAACGATGCACTTAGGAGCATGTATAATGCAGAAAAGCGTGGGAAGCGGCAAGTGATGATCAGACCATCATCAAAAGTCATCATCAAGTTCCTCCAAGTCATGCAAAAGCATGGTTATATTGGAGAGTTTGAGCTAGTTGATGATCATAGAGCAGGGAAAATTGTTGTCGAGCTTAATGGAAGGCTCAACAAATGTGGAGTTATCAGTCCTCGTTTTAATATCGGGGTGAAAGAAATTGAGTCATGGACTGCTCGCCTGCTACCCTCCCGACAGTTTGGATTCATTGTTTTGACAACATCTGCTGGCATCATGGATCATGATGAAGCCAGGAGAAAGAATGCTGGA

Fln Alignment:

sp_v1.1_unigene17286___MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAG
A9NN71_______________MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAG

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
15	33	66			0.997452
17			66	33	0.997452
18			33	66	0.997452
19		66	33		0.997452
20	66		33		0.997452
21		66	33		0.997452
24	33			33	0.997753
26		33		66	0.997452
36	16		83		0.994512
37	83	16			0.994512
38	16		83		0.994512
39		83		16	0.994512
40		83		16	0.994512
41		83	16		0.994512
42	83		16		0.994512
43	83		16		0.994512
45			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain