SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17283

Length: 3332 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17283
ATGGGTATATGAGAAATCTCTGAGCATCCTCGATAGAGGCGTAGAATTGGTGAAAAAGTGTAGGAAAACCAGCCCTCTTAATCTTTTCCGGAACGTTAGATATGCTTCTGAAATTCAGCAGCTGGAGAAGGAGATCCGTGACTTCGTTCAGTACGAGCTGCCTCTTGAGTTATCGCTTGAGTTATCGCTTGAGTTGGCTGTCACTCAGTTCAAGAATCTTCGCCATCTCTACGAGTTGGAGGCAGTGGATGAGAGAAACGTGAATGAAACAATTGTTCCCAAGCTCACCAATGATCCCGATGAGAATGCGATGATGCTGCAACAAATGGGTTCTGATGGTATGTTTGATGGAGCTTTCGATGAATCTCCTACCTCTAATTGTAAAGGGTCAGGTAAGTCTGATTTTGTTGTGGGGTTCGAGAAAAATATTGATAATTTGAAGAGGATTCTGCTCCAGAGAGATGTGTCCGTGGTTGGAGTGCAAGGTATGGGGGGTATTGGCAAAACAACTATGGCATTGTCCCTCTGCGATGATGAAGAAATTAAAGGTACTTTTCAAAATAATATCATTTTTATCACGGTCTCGCAATCCCCGAACGTGAAGGAAATTTTAGAGACCATGTGGGAGAAGATTGTTCGGAGGAAGAGACCTGATTTTCAGAATGTTGAGGATGCACATAGACAGCTGCAGCAGCAGCTGCTGAGGCAAGCCAAGCGAACTCTTGTGGTGTTGGATGATGTCTGGTCTAAGGCAATTTTGGAAAAATTGTTATTTGAAGGTGAAGGTTATAAGACCCTTGTGACAACCCGAGATCGTTCTATCATCCGCACAACAACCTCTACCAGGCTTTATGATTTGCCATTGCTGGATGATGACGATGCTCTGCCTCTTTTCTGCTTTTGGGCTTTCGGACAGAAAACAATGCCAATTAATGCAGACGAGCAGCTAGTCAAGCAGGTGCAAGCGGAATGTAAAGGTCTGCCACTTGCTCTGAAGGTGATTGGAAGCTCTTTGCATGGGCAGCCTCATCCGGCGTGGGAGAGTGCCAAGAACAAGCTTTTACATGGAAAATCAATATCAGATTATCACAAAGAAGGGCTTCTTAGATGCTTGGAAACCAGTGTTGATGTCCTGGATGAGGAAGCACGGGAGTGCTTCTTAGACTTGGGGTCATTTCCAGAGGATAGGAAAATCTCAGTGGATGCATTGCTAGATATTTGGGTTTATGTGCGGAAGATAGAGTGGCATGATGCGTTTGCCATCTTATTAGAACTTGCAAGCAGGAATCTATTGAATTTAACAAGCAATCTCAGATGCAGTAGAAGCCAAGCAATCGATTATGGCAGTGCTTCTGAGCTGTACTTTTCTCAGCATGATGTAATGCGAGACTTGGCCCTATATTTGGCATCTGGAAGCANTATAGTTCGTAGGAAGAGGTTGCTTATGCCTAAGAAGGAGGACAATTTGCCTGGAAAATGGGAACTGCTCAAGGATCAAGCTTTTGATGCCCAGATCGTTTCCATTCACACAGGTGCAATGGAAGANGANCAGTGGTGTGAGATGAATTTTCCACAAGCAGAGGCTTTGATTTTACTTTTTTCTGCGAGCAAATACTTTCTTCCATCATTTTTGAGTTCTATGAGAAAACTGAAAGTCCTCGTAATAATTAATTACGGATCAAAGAGAGCCTCAGTGAAAGGTCTACCAGCCTTATCTTCACTTACTCAGCTTAAGACTATTCACTTGGAGAAGTTGAATGTGCCCCGCCTTCAAGAGCACAGTAAAGTCTTGCAGAACTTAGAGAAGCTATCTTTGAGCTTATGTGAAGGGCTTGGAAATATGTCCAGGTTCAACAGCTCCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTAGACCACTGCTGTGATTTAGAAGAGCTGCCCCCTGGCATATGTAACACGTCTTCAGTTGAGAAGTGGTCTATCACTAACTGTCACCTCCTACAAAAGTTGCCTGATGACTTGGGGAAGCTCAGCTCTTTAAGAATGTTAAGGGTATCTGCATGTCTAGCTCTGAAAGAGCTTCCAGCATCTATTGAAAAACTTGGAAAGCTGGAATATCTAGACATTTCGCTATGCGAGTGCCTAAAAGAACTTCCAGACGAAATAGGACAATTAAAGAAACTCGAAAAGCTTGACATGAGAGAATGTTCTCGTGTGAGGAAGCTGCCTAAATCAGTTGCAGGGCTGAGATGTCTAAAGCATGTTATCTGTGATGAGAAGATTGGACAGCAATGGATGCGTGTGAAGAGCTCTGCCATCCCGGAGCTTAGAGTTGAAATTGTAGACGCACACTTCAGCCTGGATTGGCTGGATGCTTGATATCCTTCCTAGACAGCAAGGGATTGACTCATGCGCTGGCAAGATATCAAGAAGACATCCTACCAAGTTAGCAAAGACAGCAAGGGATTGAGTCATACGCTGCTCGAGATCAAGAAGACAGGCTACCTACAGAGCAAAGATTTAAATCGTAAACTGCTTATGACGTGCTTTTATGGTGGAGAGATTCCTGATGGACGGGATAAAATGACTTTGCAGTCATGTCCCATTTCTTCCAAAACCTATGCATCCATGGAGTACATCATTCCAACTAACTACTTGCCTTTGCACAGTTATCCACAGTTTCAAAGGCAACCTAGTCCTCATGGCAACATTTAGACCTTTGGAAATATCATAAGTGTTGTGTTTACTTTTTTATGTGCTGGACTATATGTGTGGACAAGAGTGAACCGGGAGGAATCATTAAGAAAGACTAGAATTACTGACGCAGACCTAAGCTAAAATGGGAAAGATTACAGGTATTGAAAAGTCTCCAAGTTCCATTGGAGCAGACTAAGATGATGATCTCGCTTCTGCAACTAAATCACTAGAGAAACGCATTTATCTTTCACAAATCCAATGTAAATAGATACTTCTCTTATCCTTGTTCCATATGAGGATCTTTTGTACATATATCTCATGTAAGGACTTTTTTGTATATATATGTATCTCTATCAAGCATCTTGAAGTGAAGTCTATCAGTGTAAATGTAAATAGTGACCTCTCTTACAAAGGATTCTTTTTGTAAATTATCTCCTTTTGTAAAAAGATTTATCTATCAAGAATCCTGAAGTGAAGTCCATGAATGTGAAATGTAAATGGCCAATTCTCTTCCATACAAGAATCCTTTGTTATTTTTATGACAGTAATAAACATGTTTTGCAATGTGAAGTCCTTATTCCAGACAAGGATCCTTTGTAATGTTTTGCTTTATTTTATGCAAATAATAGACATGTTAACTAAC

Ace file of the UniGene sp_v1.1_unigene17283

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=1 Tax=Pinus lambertiana RepID=Q1L6F3_PINLA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	nbs-lrr resistance protein	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	apoptotic process	GO:0006915	Biological Process	68%
Blast2go	defense response	GO:0006952	Biological Process	68%
Blast2go	protein binding	GO:0005515	Molecular Function	68%
Blast2go	ATP binding	GO:0005524	Molecular Function	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Disease resistance protein	IPR000767	-	0.0	68%
Blast2go	NB-ARC	IPR002182	-	0.0	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: your sequence is shorter than subject: 790 - 835

Fln protein: WVYEKSLSILDRGVELVKKCRKTSPLNLFRNVRYASEIQQLEKEIRDFVQYELPLELSLELSLELAVTQFKNLRHLYELEAVDERNVNETIVPKLTNDPDENAMMLQQMGSDGMFDGAFDESPTSNCKGSGKSDFVVGFEKNIDNLKRILLQRDVSVVGVQGMGGIGKTTMALSLCDDEEIKGTFQNNIIFITVSQSPNVKEILETMWEKIVRRKRPDFQNVEDAHRQLQQQLLRQAKRTLVVLDDVWSKAILEKLLFEGEGYKTLVTTRDRSIIRTTTSTRLYDLPLLDDDDALPLFCFWAFGQKTMPINADEQLVKQVQAECKGLPLALKVIGSSLHGQPHPAWESAKNKLLHGKSISDYHKEGLLRCLETSVDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWHDAFAILLELASRNLLNLTSNLRCSRSQAIDYGSASELYFSQHDVMRDLALYLASGSNIVRRKRLLMPKKEDNLPGKWELLKDQAFDAQIVSIHTGAMEDDQWCEMNFPQAEALILLFSASKYFLPSFLSSMRKLKVLVIINYGSKRASVKGLPALSSLTQLKTIHLEKLNVPRLQEHSKVLQNLEKLSLSLCEGLGNMSRFNSSQSSLKLPIMLDFNLDHCCDLEELPPGICNTSSVEKWSITNCHLLQKLPDDLGKLSSLRMLRVSACLALKELPASIEKLGKLEYLDISLCECLKELPDEIGQLKKLEKLDMRECSRVRKLPKSVAGLRCLKHVICDEKIGQQWMRVKSSAIPELRVEIVDAHFSLDWLDA*

Protein Length: 791

Fln nts: ATGGGTATATGAGAAATCTCTGAGCATCCTCGATAGAGGCGTAGAATTGGTGAAAAAGTGTAGGAAAACCAGCCCTCTTAATCTTTTCCGGAACGTTAGATATGCTTCTGAAATTCAGCAGCTGGAGAAGGAGATCCGTGACTTCGTTCAGTACGAGCTGCCTCTTGAGTTATCGCTTGAGTTATCGCTTGAGTTGGCTGTCACTCAGTTCAAGAATCTTCGCCATCTCTACGAGTTGGAGGCAGTGGATGAGAGAAACGTGAATGAAACAATTGTTCCCAAGCTCACCAATGATCCCGATGAGAATGCGATGATGCTGCAACAAATGGGTTCTGATGGTATGTTTGATGGAGCTTTCGATGAATCTCCTACCTCTAATTGTAAAGGGTCAGGTAAGTCTGATTTTGTTGTGGGGTTCGAGAAAAATATTGATAATTTGAAGAGGATTCTGCTCCAGAGAGATGTGTCCGTGGTTGGAGTGCAAGGTATGGGGGGTATTGGCAAAACAACTATGGCATTGTCCCTCTGCGATGATGAAGAAATTAAAGGTACTTTTCAAAATAATATCATTTTTATCACGGTCTCGCAATCCCCGAACGTGAAGGAAATTTTAGAGACCATGTGGGAGAAGATTGTTCGGAGGAAGAGACCTGATTTTCAGAATGTTGAGGATGCACATAGACAGCTGCAGCAGCAGCTGCTGAGGCAAGCCAAGCGAACTCTTGTGGTGTTGGATGATGTCTGGTCTAAGGCAATTTTGGAAAAATTGTTATTTGAAGGTGAAGGTTATAAGACCCTTGTGACAACCCGAGATCGTTCTATCATCCGCACAACAACCTCTACCAGGCTTTATGATTTGCCATTGCTGGATGATGACGATGCTCTGCCTCTTTTCTGCTTTTGGGCTTTCGGACAGAAAACAATGCCAATTAATGCAGACGAGCAGCTAGTCAAGCAGGTGCAAGCGGAATGTAAAGGTCTGCCACTTGCTCTGAAGGTGATTGGAAGCTCTTTGCATGGGCAGCCTCATCCGGCGTGGGAGAGTGCCAAGAACAAGCTTTTACATGGAAAATCAATATCAGATTATCACAAAGAAGGGCTTCTTAGATGCTTGGAAACCAGTGTTGATGTCCTGGATGAGGAAGCACGGGAGTGCTTCTTAGACTTGGGGTCATTTCCAGAGGATAGGAAAATCTCAGTGGATGCATTGCTAGATATTTGGGTTTATGTGCGGAAGATAGAGTGGCATGATGCGTTTGCCATCTTATTAGAACTTGCAAGCAGGAATCTATTGAATTTAACAAGCAATCTCAGATGCAGTAGAAGCCAAGCAATCGATTATGGCAGTGCTTCTGAGCTGTACTTTTCTCAGCATGATGTAATGCGAGACTTGGCCCTATATTTGGCATCTGGAAGCAaTATAGTTCGTAGGAAGAGGTTGCTTATGCCTAAGAAGGAGGACAATTTGCCTGGAAAATGGGAACTGCTCAAGGATCAAGCTTTTGATGCCCAGATCGTTTCCATTCACACAGGTGCAATGGAAGAcGAtCAGTGGTGTGAGATGAATTTTCCACAAGCAGAGGCTTTGATTTTACTTTTTTCTGCGAGCAAATACTTTCTTCCATCATTTTTGAGTTCTATGAGAAAACTGAAAGTCCTCGTAATAATTAATTACGGATCAAAGAGAGCCTCAGTGAAAGGTCTACCAGCCTTATCTTCACTTACTCAGCTTAAGACTATTCACTTGGAGAAGTTGAATGTGCCCCGCCTTCAAGAGCACAGTAAAGTCTTGCAGAACTTAGAGAAGCTATCTTTGAGCTTATGTGAAGGGCTTGGAAATATGTCCAGGTTCAACAGCTCCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTAGACCACTGCTGTGATTTAGAAGAGCTGCCCCCTGGCATATGTAACACGTCTTCAGTTGAGAAGTGGTCTATCACTAACTGTCACCTCCTACAAAAGTTGCCTGATGACTTGGGGAAGCTCAGCTCTTTAAGAATGTTAAGGGTATCTGCATGTCTAGCTCTGAAAGAGCTTCCAGCATCTATTGAAAAACTTGGAAAGCTGGAATATCTAGACATTTCGCTATGCGAGTGCCTAAAAGAACTTCCAGACGAAATAGGACAATTAAAGAAACTCGAAAAGCTTGACATGAGAGAATGTTCTCGTGTGAGGAAGCTGCCTAAATCAGTTGCAGGGCTGAGATGTCTAAAGCATGTTATCTGTGATGAGAAGATTGGACAGCAATGGATGCGTGTGAAGAGCTCTGCCATCCCGGAGCTTAGAGTTGAAATTGTAGACGCACACTTCAGCCTGGATTGGCTGGATGCTTGA___TATCCTTCCTAGACAGCAAGGGATTGACTCATGCGCTGGCAAGATATCAAGAAGACATCCTACCAAGTTAGCAAAGACAGCAAGGGATTGAGTCATACGCTGCTCGAGATCAAGAAGACAGGCTACCTACAGAGCAAAGATTTAAATCGTAAACTGCTTATGACGTGCTTTTATGGTGGAGAGATTCCTGATGGACGGGATAAAATGACTTTGCAGTCATGTCCCATTTCTTCCAAAACCTATGCATCCATGGAGTACATCATTCCAACTAACTACTTGCCTTTGCACAGTTATCCACAGTTTCAAAGGCAACCTAGTCCTCATGGCAACATTTAGACCTTTGGAAATATCATAAGTGTTGTGTTTACTTTTTTATGTGCTGGACTATATGTGTGGACAAGAGTGAACCGGGAGGAATCATTAAGAAAGACTAGAATTACTGACGCAGACCTAAGCTAAAATGGGAAAGATTACAGGTATTGAAAAGTCTCCAAGTTCCATTGGAGCAGACTAAGATGATGATCTCGCTTCTGCAACTAAATCACTAGAGAAACGCATTTATCTTTCACAAATCCAATGTAAATAGATACTTCTCTTATCCTTGTTCCATATGAGGATCTTTTGTACATATATCTCATGTAAGGACTTTTTTGTATATATATGTATCTCTATCAAGCATCTTGAAGTGAAGTCTATCAGTGTAAATGTAAATAGTGACCTCTCTTACAAAGGATTCTTTTTGTAAATTATCTCCTTTTGTAAAAAGATTTATCTATCAAGAATCCTGAAGTGAAGTCCATGAATGTGAAATGTAAATGGCCAATTCTCTTCCATACAAGAATCCTTTGTTATTTTTATGACAGTAATAAACATGTTTTGCAATGTGAAGTCCTTATTCCAGACAAGGATCCTTTGTAATGTTTTGCTTTATTTTATGCAAATAATAGACATGTTAACTAAC

Fln Alignment:

sp_v1.1_unigene17283___VYEKSLSILDRGVELVKKCRKTSPLNLFRNVRYASEIQQLEKEIRDFVQYXXXXXXXXXXXXXXAVTQFKNLRHLYELEAVDERNVNETIVPKLTNDPDENAMMLQQMGSDGMFDGAFDESPTSNCKGSGKSDFVVGFEKNIDNLKRILLQRDVSVVGVQGMGGIGKTTMALSLCDDEEIKGTFQNNIIFITVSQSPNVKEILETMWEKIVRRKRPDFQNVEDAHXXXXXXXXXXAKRTLVVLDDVWSKAILEKLLFEGEGYKTLVXXXXXXXXXXXXXXXLYXXXXXXXXXXXXXFCFWAFGQKTMPINADEQLVKQVQAECKGLPLALKVIGSSLHGQPHPAWESAKNKLLHGKSISDYHKEGLLRCLETSVDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWHDAFAIXXXXXXXXXXXXXXXXXXXXXQAIDYGSASELYFSQHDVMRDLALYLASGSNIVRRKRLLMPKKEDNLPGKWELLKDQAFDAQIVSIHTGAMEDDQWCEMNFPQAEALILLFSASKYFLPSFLSSMRKLKVLVIINYGSKRASVKGLPALSSLTQLKTIHLEKLNVPRLQEHSKVLQNLEKLSLSLCEGLGNMSRFNSSQSSLKLPIMLDFNLDHCCDLEELPPGICNTSSVEKWSITNCHLLQKLPDDLGKLSSLRMLRVSACLALKELPASIEKLGKLEYLDISLCECLKELPDEIGQLKKLEKLDMRECSRVRKLPKSVAGLRCLKHVICDEKIGQQWMRVKSSAIPELRVEIVDAHFSLDWLD
B8LKC3_______________IYEQFLNILNDGVALVKKCKNTSRYNVFQNLRYASQIHQLEKEITDFVRYQMPVNLSLDVKNF--IEELKNLRQLCEKGSVDERKVNEAIVPKLTNDPQKNAVMLQQIGSDDMFDGVLDEAPPSP-----KSDFVVGLEKNISNVKRILLDRDVSVVGVDGMGGVGKTTMAMALSDDQEIKGVFRNNIVFITVSQSPNLKVILETMWEKIVRRKKPEFQSVEDAHRQLQQQLLRQAKPTLVVLDDVWSRANLENLLFEGEGYKTLVTTRDRSTIPTTTSIRIYELPVLDDADAMPLFCFWAFGQKSIPSSADEHLVKQVQAECKGLPLALKVIGSSLHGEPRPVWESAKNKLRNGESISDYHKEGLLRRLESSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVILLELARRNLLNLTSNLRS---RAINYGSASELYFSQHDVMRDLALHLASRDRIVQRKRLFMPKKEESLPGKWEVLKDQAFDAQVVSIHTGAMEEDQWCEMNFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQQWLRVKSSVLKELRVEIVDAHFSLDWLD

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
186		75		25	0.996473
190			50	50	1.0
195		50	50		1.0
205	50		50		1.0
210	50	50			1.0
404	75			25	0.996473
675	33		66		0.997452
677		33		66	0.997452
695	33		66		0.997452
696	33	66			0.997452
713		25	75		0.996473
715		25	75		0.996473
718	75		25		0.996473
721		75	25		0.996473
743	25		75		0.996473
758	25			75	0.996473
770	25		75		0.996473
773	75		25		0.996473
790			50	50	1.0
799	50			50	1.0
800	50			50	1.0
812		25	75		0.996473
815	75			25	0.996473
824		50		50	1.0
834	75		25		0.996473
836		75	25		0.996473
866	75			25	0.996473
873		25		75	0.996473
886	66	33			0.997452
899		33		33	0.997753
920		66		33	0.997452
930	33			33	0.997753
935			66	33	0.997452
940			33	66	0.997452
981		33		66	1.0
1184	25		75		0.996473
1202	25		75		0.996473
1694	66		33		0.997452
1709	66		33		0.997452
1715	66	33			0.997452
1716			66	33	0.997452
1724	33		66		0.997452
1727		33		66	0.997452
1740	66		33		0.997452
1750	66		33		0.997452
1789	66		33		0.997452
1793			33	66	0.997452
1802	66			33	0.997452
1810	33	66			0.997452
1885			75	25	0.996473
1940	25		75		0.996473
1949		75		25	0.996473
1962	75		25		0.996473
1964		66		33	0.997452
2196	33		66		0.997452
2197	33			66	0.997452
2198	66		33		0.997452
2492	11	88			0.923564
2507	87	12			0.992554
2509		12	87		0.992554
2536	12		87		0.992554
2549		11	88		0.923564
2556	11			88	0.923564
2622	90		10		0.90298
2623	90			10	0.90298
2624	90		10		0.90298
2629	90			10	0.90298
2630			10	90	0.90298
2633	90		10		0.90298
2636	10	90			0.90298
2637	90	10			0.90298
2639		10	90		0.90298
2640	10		90		0.90298
2701	12	87			0.992554
2787	80	20			1.0
2849	78		21		1.0
2936		23	76		1.0
2943	30		69		1.0
2973	70		30		1.0
2974	30		70		1.0
3031			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain