SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17268

Length: 899 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17268

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana] dbj\|BAB11397.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABG48457.1\| At5g06480 [Arabidopsis thaliana]	-	-	5.0e-30	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	phosphatidylglycerol phosphatidylinositol transfer protein	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	MD-2-related lipid-recognition	IPR003172	-	0.0	69%
Blast2go	Immunoglobulin E-set	IPR014756	-	0.0	69%

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
357		33	66		0.997452
361	33		66		0.997452
362	66	33			0.997452
363	66	33			0.997452
364	66			33	0.997452
365	66			33	0.997452
366	66		33		0.997452
367			33	66	0.997452
368	66	33			0.997452
369	66			33	0.997452
373		33		66	0.997452
375		33	66		0.997452
421			25	75	0.996473
429		75		25	0.996473
430	75			25	0.996473
432	75		25		0.996473
434	75			25	0.996473
435	75		25		0.996473
438		25		75	0.996473
439			75	25	0.996473
441	25	75			0.996473
601	14	85			0.993533
633		71		14	0.984337
635	85		14		0.993533
656			12	87	0.992554
658		87	12		0.992554
674	88	11			0.923564
677		11		88	0.923564
678		88	11		0.923564
686		88		11	0.923564
687	88			11	0.923564
689	88		11		0.923564
690	88	11			0.923564
711		11		88	0.999937
719		44		55	1.0
867	58	41			1.0
868	41			58	1.0
897	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain