SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17265

Length: 843 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17265 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NWL2_PICSI	-	-	65%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	unknown [Picea sitchensis]	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	71%
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GrpE nucleotide exchange factor	IPR000740	-	0.0	71%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
526	12		87		0.992554
538	12		87		0.992554
654	85		14		0.993533
656	85	14			0.993533
661		14		85	0.993533
662	14			85	0.993533
663	14			85	0.993533
665			14	85	0.993533
667		12		87	0.992554
668	12			75	0.975346
670		87	12		0.992554
672		12	87		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain