SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17254

Length: 1973 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17254
ATGGGAAACTAAATAATTGGACAGCTTCGTCAAAATACTGGAACGGGGCTCATTCCTTGAGATCAGCCCGCGATCGAGTCCCTGCACTCGCCATCGGCCACTGTCTACAAGGACTCTGGCACTCACAGGTTTCGCACTATTGAATTCCTTTCTGAAGTTCGCCTGGGCTTCTTGGATCCGGAAGGGTTTTTACTGCGCATTGCATCGGTAGGTCGCGGCTACGAATCCCTTTGCTGTGCTCTTTTACTTATATTTTCTTGATCTCTGATATTTTCTGTTTGTGAGAGTTCTCGTTACTGCACTTTATTCTGGATCCGAAAATGCCGTTAATTTGAGTGTACTTCAAGGTGAATTATGCTGGCGGCCTATATTTGATTTTGACAATCTCGGCGCGCTAGTGGTTACCGGGAGAGCAAAGCGATAATACAGGGCAAACATGACAGAGAGCACGGGGTTTCAGCTGGGAACTGTTGGAGCTTTAAGTCTCTCTGTTATTTCCTCTGTTTCGATAGTCATCTGCAACAAGGCGCTCATCAGCACTCTCGGATTTAGCTTTGCCACAACATTGACCAGCTGGCATCTGCTGGTTACGTTCTGTTCTCTGCATATAGCATTATGGTTGAAACTGTTTGAACATAAGCCATTTGATGCACGGGCTGTAATGGGATTTGGTATTTTGAATGGTATCTCTATTGGACTTCTGAACCTCTGTCTGGGTTTTAACTCTGTTGGATTCTATCAGATGACCAAGTTGGCAATTATTCCTTGTACTGTTCTTTTGGAAACACTCTTTTTCCAAAAGGATTTCAGCCGGAAAATCCAGTTTTCACTTGTGATCCTTTTGGTGGGTGTTGGCATTGCTACTGTCACTGACTTGCAGCTCAATCTTCTAGGATCAGTCTTATCTCTGCTTGCAATAGTGACGACATGCGTTGCACAAATTATGACAAATACCATCCAGAAAAGATTCAAAGTTTCTTCAACACAGCTTTTGTACCAATCATGCCCATATCAAGCAACGACTTTGTTCATTACTGGTCCCTTTGTTGATGGGCTTTTGACAAACGAAAATGTGTTTGCATTTAAGTATACGCCTCATGTTCTAATTTTCATTGTTTTATCCTGTTTGATCTCCGTGTCTGTCAACTTCAGTACATTCCTTGTGATTGGCAAGACATCTCCAGTCACATATCAAGTTCTAGGGCACTTGAAGACTTGCTTGGTTCTGGCATTTGGCTACATTTTACTTCATGATCCATTTAGTTGGCGGAATATTCTGGGAATATTAATTGCTATAGTTGGCATGGGCTTGTATTCTTATTTTTGTGTAGTTGACAATCAGTCAAAACAAAGTGAGCCACCTGCACAACTGTCTCAGGTCAAGGATGGTGAAACAGAACCTCTTGTCATCCTCGAGAATGGATCCAACAAGGGAAATGATAATGTTGGTCCTAAGGGGCCTATATGGGCATCAAACAAGGATCTGCATGCTTAATCTAAAGCTTCACTACAGGGGTGATATCAATTCCTAAAGCTCCATTCTTTGATGAGGGTCAACTTGTTTGAGAGAAAATAGTTCTGTTGGAGCTTGTTTATGAAGGAGGTGAGCTGGACTGTTATTCATCAGAGGTTTGGATCATATATTCTATAGGACTGTAGACAATATTCATCAATTTTGCTGGTGAATTGTAGAATATTTTACGGCGGCAACTTTCTGCCAAATGGCCAATGAATGGATCCTGCTGGTTGATTTGTTTCATCGTAACTCAAATAGATTGGAGATTGCAGTACAAAACGTTTTTCTAAATGTTTGTAATGAGGTAACTAGTTGGAATAAGAAGTCCGCACTGAGCAAAGCTGCATTCAAATGAAAGCTGATCTGCTCAGCCATTGACAGTTTGTACGAGGTGGACATGTAAAGGTTTTCTTTCAAGAAAAATATTACAAGGCTTATCTTTGTTCTCCATCCAATC

Ace file of the UniGene sp_v1.1_unigene17254

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	integral membrane	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	endomembrane system	GO:0012505	Cellular Component	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF250	IPR004853	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX31

Fln msg:

Fln protein: MTESTGFQLGTVGALSLSVISSVSIVICNKALISTLGFSFATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVMGFGILNGISIGLLNLCLGFNSVGFYQMTKLAIIPCTVLLETLFFQKDFSRKIQFSLVILLVGVGIATVTDLQLNLLGSVLSLLAIVTTCVAQIMTNTIQKRFKVSSTQLLYQSCPYQATTLFITGPFVDGLLTNENVFAFKYTPHVLIFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYILLHDPFSWRNILGILIAIVGMGLYSYFCVVDNQSKQSEPPAQLSQVKDGETEPLVILENGSNKGNDNVGPKGPIWASNKDLHA*

Protein Length: 354

Fln nts: ATGGGAAACTAAATAATTGGACAGCTTCGTCAAAATACTGGAACGGGGCTCATTCCTTGAGATCAGCCCGCGATCGAGTCCCTGCACTCGCCATCGGCCACTGTCTACAAGGACTCTGGCACTCACAGGTTTCGCACTATTGAATTCCTTTCTGAAGTTCGCCTGGGCTTCTTGGATCCGGAAGGGTTTTTACTGCGCATTGCATCGGTAGGTCGCGGCTACGAATCCCTTTGCTGTGCTCTTTTACTTATATTTTCTTGATCTCTGATATTTTCTGTTTGTGAGAGTTCTCGTTACTGCACTTTATTCTGGATCCGAAAATGCCGTTAATTTGAGTGTACTTCAAGGTGAATTATGCTGGCGGCCTATATTTGATTTTGACAATCTCGGCGCGCTAGTGGTTACCGGGAGAGCAAAGCGATAATACAGGGCAAAC_-_ATGACAGAGAGCACGGGGTTTCAGCTGGGAACTGTTGGAGCTTTAAGTCTCTCTGTTATTTCCTCTGTTTCGATAGTCATCTGCAACAAGGCGCTCATCAGCACTCTCGGATTTAGCTTTGCCACAACATTGACCAGCTGGCATCTGCTGGTTACGTTCTGTTCTCTGCATATAGCATTATGGTTGAAACTGTTTGAACATAAGCCATTTGATGCACGGGCTGTAATGGGATTTGGTATTTTGAATGGTATCTCTATTGGACTTCTGAACCTCTGTCTGGGTTTTAACTCTGTTGGATTCTATCAGATGACCAAGTTGGCAATTATTCCTTGTACTGTTCTTTTGGAAACACTCTTTTTCCAAAAGGATTTCAGCCGGAAAATCCAGTTTTCACTTGTGATCCTTTTGGTGGGTGTTGGCATTGCTACTGTCACTGACTTGCAGCTCAATCTTCTAGGATCAGTCTTATCTCTGCTTGCAATAGTGACGACATGCGTTGCACAAATTATGACAAATACCATCCAGAAAAGATTCAAAGTTTCTTCAACACAGCTTTTGTACCAATCATGCCCATATCAAGCAACGACTTTGTTCATTACTGGTCCCTTTGTTGATGGGCTTTTGACAAACGAAAATGTGTTTGCATTTAAGTATACGCCTCATGTTCTAATTTTCATTGTTTTATCCTGTTTGATCTCCGTGTCTGTCAACTTCAGTACATTCCTTGTGATTGGCAAGACATCTCCAGTCACATATCAAGTTCTAGGGCACTTGAAGACTTGCTTGGTTCTGGCATTTGGCTACATTTTACTTCATGATCCATTTAGTTGGCGGAATATTCTGGGAATATTAATTGCTATAGTTGGCATGGGCTTGTATTCTTATTTTTGTGTAGTTGACAATCAGTCAAAACAAAGTGAGCCACCTGCACAACTGTCTCAGGTCAAGGATGGTGAAACAGAACCTCTTGTCATCCTCGAGAATGGATCCAACAAGGGAAATGATAATGTTGGTCCTAAGGGGCCTATATGGGCATCAAACAAGGATCTGCATGCTTAA___TCTAAAGCTTCACTACAGGGGTGATATCAATTCCTAAAGCTCCATTCTTTGATGAGGGTCAACTTGTTTGAGAGAAAATAGTTCTGTTGGAGCTTGTTTATGAAGGAGGTGAGCTGGACTGTTATTCATCAGAGGTTTGGATCATATATTCTATAGGACTGTAGACAATATTCATCAATTTTGCTGGTGAATTGTAGAATATTTTACGGCGGCAACTTTCTGCCAAATGGCCAATGAATGGATCCTGCTGGTTGATTTGTTTCATCGTAACTCAAATAGATTGGAGATTGCAGTACAAAACGTTTTTCTAAATGTTTGTAATGAGGTAACTAGTTGGAATAAGAAGTCCGCACTGAGCAAAGCTGCATTCAAATGAAAGCTGATCTGCTCAGCCATTGACAGTTTGTACGAGGTGGACATGTAAAGGTTTTCTTTCAAGAAAAATATTACAAGGCTTATCTTTGTTCTCCATCCAATC

Fln Alignment:

sp_v1.1_unigene17254___MTESTGFQLGTVGAXXXXXXXXXXXXXCNKALISTLGFSFATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVMXXXXXXXXXXXXXXXXXXFNSVGFYQMTKLAIIPCTVLLETLFFQKDFSRKIQFSLVILLVGVGIATVTDXXXXXXXXXXXXXAIVTTCVAQIMTNTIQKRFKVSSTQLLYQSCPYQATTLFITGPFVDGLLTNENVFAFKYTPHVLIFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYILLHDPFSWRNILGILIAIVGMGLYSYFCVVDNQSKQSEPPAQLSQVKDGETEPLVILENGSNKGNDNVGPKGPIWASNKDLHA
A9NX31_______________MTESTGFQLGTVGALSLSVISSVSIVICNKALISTLGFNFATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVMGFGILNGISIGLLNLCLGFNSVGFYQMTKLAIIPCTVLLETLFFKKDFSRKIQFSLVILLLGVGIATVTDLQLNLLGSVLSLLAIVTTCVAQIMTNTIQKRFKVSSTQLLYQSCPYQATTLFITGPFVDGLLTNQNVFAFKYTPHVLIFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYILLHDPFSWRNILGILIAIVGMGLYSYFCAVDSQSKQSEPPAQLSQVKDGETEPLIIIENGSNKGNDSVGPKGPIWASNKDLHA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
801	25		75		0.996473
958	83			16	0.994512
959	16			83	0.994512
984	83		16		0.994512
1030		14		85	0.993533
1302		11		88	0.923564
1385	87		12		0.992554
1485		16		83	0.994512
1510		87		12	0.992554
1511			12	87	0.992554
1512	87		12		0.992554
1513		87	12		0.992554
1515	12		87		0.992554
1517		12	87		0.992554
1625	64		29		1.0
1735	90	9			0.999872
1740		9		90	0.999872
1742		90		9	0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain