SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17249

Length: 1284 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17249

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	dna binding	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	89%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	89%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, PHD-type	IPR001965	-	89%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	89%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	89%
Blast2go	Zinc finger, PHD-type, conserved site	IPR019786	-	89%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	89%
Blast2go	Protein of unknown function DUF3594	IPR021998	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZI0

Fln msg:

Fln protein: MSMEGGYIKSMEGGSGPYNPRTVEEVFKDFKGRRAGMIKALTNDVEEFYQQCDPEKENLCLYGLPNESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVSFYFGARFGFDKNERKRLFIMINELPTIFEVVTGAAKKQSKEKTTVTNNSSSKNKSGIKPRASESQTKPSKLIPPKDEDDTLDEEEDDEHGDTLCGACGDNYASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPTCSNKRPRV*

Protein Length: 266

Fln nts: TTACTAATGGGGAAGGCAACAGGCTGAAGGAAATACATTTGGATTTGTTTTTGGGAATTGTCCATTGCTTTTCATTCGTTCGCTTTAACCAATCTGAACAAATAGATTACAAGCCCAGGAGCCGGAGGACTCATAACCAGCTCTATTTCTTTTCTGCATTTCACAGCCAGTGCAGGCAAATAAAATATATACAGAGACATC_-_ATGTCCATGGAAGGAGGGTATATCAAATCAATGGAAGGAGGGTCGGGGCCTTACAATCCGCGCACGGTGGAAGAAGTCTTCAAGGATTTCAAGGGCCGAAGAGCCGGAATGATTAAGGCCCTCACCAATGATGTGGAAGAGTTTTACCAACAATGTGATCCGGAGAAAGAGAACTTGTGTCTTTATGGGTTGCCAAATGAGTCATGGGAAGTTAATCTTCCAGCTGAAGAGGTACCACCAGAGCTTCCGGAGCCAGCTCTGGGAATTAACTTTGCGCGGGACGGAATGCAAGAAAAAGATTGGTTATCTTTGGTTGCTGTTCATAGTGATGCTTGGCTGCTGGCTGTTTCGTTCTACTTTGGTGCAAGATTTGGGTTCGACAAGAATGAAAGGAAAAGGCTTTTTATCATGATCAATGAACTTCCAACTATTTTTGAGGTTGTTACTGGAGCTGCAAAAAAGCAATCAAAAGAAAAAACTACTGTAACCAACAACAGTAGCAGCAAGAACAAGTCTGGTATAAAGCCCCGAGCATCTGAATCTCAAACAAAGCCATCAAAGTTAATACCACCTAAAGATGAGGATGATACGTTGGATGAAGAGGAAGACGATGAACATGGTGACACACTTTGTGGAGCTTGTGGTGACAATTATGCCTCTGATGAGTTTTGGATCTGTTGTGATATGTGTGAGAAATGGTTCCATGGCAAGTGTGTTAAGATTACTCCTGCGAGAGCTGAACACATTAAGCATTATAAATGTCCAACATGCAGCAACAAAAGGCCCCGAGTTTAA___TGGATGGCCGAGGGGAACTTTAATTCAACTTAACAGGTGATGACTATCTCTGATGTTTCTACCTAGCGGTTTCGGATGCAGAAGTGTCTTCAGCCCTTGTGGTTTGTTCCTTGCACTTGGAAGGCTTCCAATTAAGCTCTAGGCTGTCGCAAGCTGAGACCTGTTGGAGGCGGTCAGTTTTGTATGCAGTATCTGTACGAATATTGGGCTGGCTGGTTGTTTAATTTTCTTGTAAGACTCAAGGCTTAAATCTTTCAAGTTTTAGATCTCCATATACCTGAGCCATTG

Fln Alignment:

sp_v1.1_unigene17249___MEGGYIKSMEGGSGPYNPRTVEEVFKDFKGRRAGMIKALTNDVEEFYQQCDPEKENLCLYGLPNESWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVSFYFGARFGFDKNERKRLFIMINELPTIFEVVTGAAKKQXXXXXXXXXXXXXXXXXGIKPRASESQTKPSKLIPPKXXXXXXXXXXXXXHGDTLCGACGDNYASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPTCSNKRPRV
A9NZI0_______________MEGGYIKPMEGGSGPYNPRTVEEVFKDFKGRRAGMIKALTNDVEEFYQQCDPEKENLCLYGLPNESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVSFYFGARFGFDRNERKRLFIMINELPTIFEVVTGAAKKQSKEKSTVTNNSSSKNKSGIKPRVSESQTKSSKLPPPKDEDDTLDEEEDDEHGDTLCGACGENYASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPSCSNKRPRV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
535			86	13	0.999973
599	88		11		0.923564
850		60	40		1.0
882	40		60		1.0
888		40		60	1.0
893	40		60		1.0
917		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain