SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17227

Length: 1045 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17227

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	amino acid transporter, putative	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	amino acid	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	amino acid import	GO:0043090	Biological Process	93%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	93%
Blast2go	integral to membrane	GO:0016021	Cellular Component	93%
Blast2go	plastid	GO:0009536	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Z1

Fln msg: Separated hits, possible frame ERROR between 750 and 831, Unexpected STOP codon at 3' end. Distance to subject end: 246 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 189 - 508

Fln protein: KTGISNDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPSAMASLGWGPGVVVLVLSWVITLYTLWQMVEMHEMIPGKRFDRYHELGQQAFGEKLGLWIVVPQQLIVEIGVDIVYMVxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRESYFIAIFGSVHFVLSQLPNFNSVVGISLAAAVMSLRYAF*

Protein Length: 190

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGGAGCTTGCTATACTACTATGCAGATATTTTATTTGAACATGGGTTAAGCTCTGCGGTGAATTAGATTGCTATAAAGCCGCGTCGTGACCTTGGCTGTCACTCAATTCTTGGAAGCTCCCTTTGACAGCTTCCAGCTGCCGTAGGTCAGAGCTTAAATTGCTCTCAGTTTGGATAAAGCACTAATCGAGTTAGGATTGAGCAGAGCTCAAAGCCGAAGTCTGCTGCTGTATAAGTTTTGGTAGAAATTTGAAATCCCCTTGCAGAGGAAGATTTCTTTTAAGATCGACCATGTTGTCCGAGAACGCAGTGGACGACGGTTCTTTTGCCGAACAGGATCATGCAAATGGCACCAAAGGGAGTAAAAAACCGGAATATCTAACGATGACTGGCTGCCAATTACATCATCTCGTAATGCCAAGTGGTGGTACTCAACATTCCACAATGTCACTGCCATGGTGGGCGCTGGAGTGCTCGGTTTGCCCTCTGCTATGGCAAGCTTAGGATGGGGCCCGGGTGTTGTAGTGCTTGTCCTATCATGGGTAATTACCCTATATACACTTTGGCAGATGGTTGAGATGCATGAGATGATTCCAGGAAAACGTTTTGATCGGTATCATGAGTTGGGGCAACAAGCTTTCGGTGAAAAACTTGGTTTATGGATTGTTGTCCCACAACAATTGATAGTTGAAATTGGTGTTGATATAGTCTACATGGTTACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATAAGAGAGTCTTACTTCATTGCTATTTTTGGTTCAGTCCATTTTGTGCTATCACAACTGCCTAATTTCAATTCAGTGGTTGGAATTTCTCTGGCTGCAGCGGTCATGTCTCTAAGGTACGCTTTTTAAGAGTCGTTGCCGGAAGTAGATGCTTCTGTTGTAGTTTGAGTGTCTGAAAATTATTGGTTGCGTTTGCCAACTAGGTTTTCTGCTTT

Fln Alignment:

sp_v1.1_unigene17227___ISNDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPSAMAXXXXXXXXXXXXXXXXITLYTLWQMVEMH---EMIPGKRFDRYHELGQQAFGEKLGLWIVVPQQLIVEIGVDIVYMVTxxxxxxxxxxxxxxxxxxxxxxxxxxxIRESYFIAIFGSVHFVLSQLPNFNSVVGISLAAAVMSLRYAF
D5A7Z1_______________ITDEDGHP---QRTGDVWTASSHVITAVIGSGVLSLAWSMSQLGWIAGPLVLLAFSFVTYYTSMLLADTYRSPDPVTGRRNYTYTDAVTAILGGKRVFLCGIVQYLNL-LGTTIGYTITxxxxxxxxxxxxxxxxxxxxxxxxxxxISNNLYMAIFGAAQVLLSQIPNFSKIWWLSTLAAVMSLTYSF

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
541			80	20	0.995493
542			80	20	0.995493
545	20	80			0.995493
547			80	20	0.995493
549	20			80	0.995493
552			20	80	0.995493
553	20		80		0.995493
554		20		80	0.995493
560		20		80	0.995493
753			33	33	0.997753
754			33	66	0.997452
760	66		33		0.997452
797		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain