SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17226

Length: 893 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17226

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	universal stress protein (USP) family protein	-	-	66%
FL-Next	sp=Universal stress protein A-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	universal stress protein family protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Universal stress protein A	IPR006015	-	81%
Blast2go	UspA	IPR006016	-	81%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	81%

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
363			87	12	0.992554
399		11		88	0.923564
402		11	88		0.923564
404			88	11	0.923564
406	11	88			0.923564
407		11	88		0.923564
412	88			11	0.923564
413	88		11		0.923564
415		11	88		0.923564
417	87	12			0.992554
418	87			12	0.992554
419		12		87	0.992554
420	12			87	0.992554
470		12		87	0.992554
496		80		20	0.999996
497		81		18	1.0
498	75		18	6	1.0
500	75	18		6	1.0
502	81		18		1.0
504	25			75	1.0
507	81	18			1.0
508	18		81		1.0
523		16	83		1.0
527			16	83	1.0
531	15		85		1.0
536			15	85	1.0
537		85	15		1.0
539	84			15	1.0
541	84			15	1.0
542		15	84		1.0
543	15		84		1.0
544		15	84		1.0
595	12		87		0.999964
832			15	84	0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain