SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17225

Length: 1244 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17225

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pre-mRNA-splicing factor cwc15, putative; K12863 protein CWC15	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	pre-mrna-splicing factor cwc15	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	0.0	87%
Blast2go	spliceosomal complex	GO:0005681	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cwf15/Cwc15 cell cycle control protein	IPR006973	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRY0

Fln msg:

Fln protein: MTTAARPTWAPAKGGNEQGGTRIFGPSQKFSSRDLAAHTTLKSRKDGQDTEEELQKRNLREELDERERRHFSSKDRGYADDRDRRKGASAGNLYLEGSRREAEDKIAPRNIDADDSDVDIKNDSDESDDDDDDGEDETAALLAELERIRNERAEEKKRLERQKQEEDLKQKEAELIRGNPLLNPTSFNVKRRWDDDVVFRNQTRGESKVPKRFINDTIRNDFHRKFLQKYMK*

Protein Length: 234

Fln nts: TTGAGACAAATATGTGAAATCATTAAAAACGTATAGCCAAGGCCATACCGGTCGATACAGGGACGCAAGCCGGATACCTTTCCCGTGGATATACGAGGGCTTTTAAATCGAAGGAAGAGATTACGGTCATACACAACCCTCTGGAGCAGAGATTTTCAGTGGAATTCGTAGCTTCGGCAACCATAGAGATTTGCAGCTGAATTCGTAGCTTCGGTGACGGGAGAATTTTGCAGGTCCGCTGAAAATTTTTGGAAAAGGTTTATTGCCAGTTAGCCGGCGGTC_-_ATGACGACTGCTGCTCGCCCCACATGGGCGCCCGCCAAGGGAGGCAATGAACAGGGCGGGACAAGGATTTTCGGTCCTTCTCAGAAGTTTTCATCCAGGGATCTCGCAGCCCACACTACCCTGAAATCCAGAAAGGATGGTCAGGATACTGAAGAGGAATTGCAGAAAAGGAACCTAAGGGAAGAGCTTGATGAACGTGAACGTAGGCATTTTTCTTCTAAAGATAGAGGATATGCAGATGACAGGGACCGTAGAAAAGGAGCAAGTGCGGGCAATCTTTATCTTGAAGGGTCTAGAAGAGAGGCTGAAGACAAGATTGCTCCTCGAAATATTGATGCTGATGATTCTGATGTTGATATAAAAAATGATTCAGATGAAAGTGATGATGATGATGATGATGGCGAGGATGAAACAGCAGCTTTATTAGCAGAACTAGAGCGGATAAGAAATGAAAGAGCTGAAGAGAAGAAGCGCCTGGAGCGTCAAAAACAAGAAGAGGATTTAAAACAAAAAGAAGCAGAGTTGATACGTGGCAACCCATTGCTCAACCCTACATCTTTTAATGTGAAAAGGAGGTGGGATGATGATGTTGTTTTCAGGAATCAAACCCGTGGTGAATCCAAGGTTCCTAAGCGCTTCATCAATGACACAATTAGAAATGATTTTCACCGTAAATTCTTGCAAAAGTATATGAAGTAA___TGGTTTAAAAACAGGCTCCGCTTATATGCTTTACAAATACATTTGGTGTAATTTGATCAGAATACATGGAGAACAGAATATGAAGTTTTCGATTGAAGTTATATTTTGTACTTGGAAGTTTTTGATTTATTGCTTAAGATTGTTCCAACCTTGCAAAGTGGAAATTTCAAAAATTAGATCTTGAAGCAAATTGTGGGTTAACATGCCAACTTGATAAAACAAGTTTTTGATAGACATCACATTGAAATCCAATATTTACTTTT

Fln Alignment:

sp_v1.1_unigene17225___MTTAARPTWAPAKGGNEQGGTRIFGPSQKFSSRDLAAHTTLKSRKDGQDTEEELQKRNXXXXXXXXXXXHFSSKDRGYADDRDRRKGASAGNLYLEGSRREAEDKIAPR
A9NRY0_______________MTTAARPTWAPAKGGNEQGGTRIFGPSQKFSSRDLAAHTTLKSRKDGQDTQDELQKRNLRDELEEREHRHFSSKDRGYADDRDRRKGASAGNLYLEGARREAEDKIAPR

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
51	16		83		0.994512
53		83	16		0.994512
57		8	33		1.0
58	66		33		1.0
59		58	33		1.0
76		10		90	0.999898
77	85		15		1.0
78		85		15	1.0
80	5		10	85	0.999793
82			10	90	0.999898
83	10	85			0.999793
85	9	90			0.999842
86			90	9	0.999842
90	90	9			0.999842
92	90		9		0.999842
98		9	90		0.999872
246	55			45	1.0
835			10	90	0.90298
836	90			10	0.90298
838	90		10		0.90298
841		10		90	0.90298
844			10	90	0.90298
845	90		10		0.90298
846	90	10			0.90298
850		10	90		0.90298
852	90			10	0.90298
1074	16			83	0.994512
1093		83		16	0.994512
1094			16	83	0.994512
1095			16	83	0.994512
1133			15	84	0.999986
1142			45	54	1.0
1147	14			85	0.993533
1185	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
663	682	TGA TGA TGA TGA TGA TGA TG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain