SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17209

Length: 1379 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17209

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal RNA assembly protein mis3, putative; K06961	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	76%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K Homology domain	IPR004087	-	0.0	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6H683

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 252 - 386

Fln protein: MEENGREQMQEERKGRYKGKHDKPKPWDNPDIDHWKVEKFNPSWNETGLLEVSSFSTLFPQYREKYLQDAWPTVTRALTEHGISCQLNLVEGSMSVSTTRKTKDPYIIIKARDLIKLLSRSVPVTQAIKILDDEMHCDIIKIGDITRNKERFVKRRQRLLGPNGSTLKAIELLTGCYVLVQGNTVAAMGSFKGLKQVRRIAEDCIRNIHPIYHIKELMIKRELAKDPELAEENWDRFLPKFKKRNVKQKKLK

Protein Length: 253

Fln nts: ATGGGGGGAGATTGAGATCGAGAGCACACCACCATTAAGAGGAACTGTTTTTTGAAATCAGACATCAACCCAATTATTAGGTGGGCTTTGTTCACTGGAGGCGAGAGAAGCAGCGGCAGGTCCAAAGCCAGCAGTTTACCTCGCAGTTGAACATACAAATCCAGAGACTGTTGAAGCACTCATCGAATATCCAGTGGAAAAGTCAGGACTAGAACCTGTTGTTTACCCATCAGCAGGGGCAAGAACAGCGGAAGCAAGGGTCAAGGTAGAAGTTGAAGGGCCACTACCCCGTACAAATCCTGTTCCAGGGCCATATCCCATTGGAGATCGAGAGCCTATAGACCCAGAGAAAGAGTCAGTTATAAAGCCATAGCCTTGCCCTGTAGCTTCCCTTCGCGTGGTTCCAAATCCATGACCCGTTTGTATAGTTATATAGTGGAATAACCATCTTTCAGAACCATCAGTTGACTCAGTTTCTCGAGATCGAGTAGCTATAGTTCGCCCAGCATCTTTGTTAGTTTAAGAAGCAGTCCCACCACTCTTTCAGTATAAGTTAAGGTTTACCTTGAATCAGCAACAAAGCGAGCAGAGCCTGTTTTATATTCCCTAGTTCCGGAGCAACA_-_ATGGAGGAAAATGGGAGAGAGCAGATGCAGGAGGAGAGGAAGGGCCGTTACAAAGGCAAACATGACAAGCCAAAGCCATGGGACAATCCCGACATCGATCACTGGAAAGTTGAGAAATTCAACCCCTCTTGGAACGAAACTGGATTGCTCGAAGTCAGCTCTTTCTCCACTCTCTTTCCACAGTACAGAGAAAAATACTTGCAAGATGCATGGCCTACCGTGACACGCGCTCTGACGGAACATGGTATATCTTGTCAGCTGAATCTTGTTGAGGGATCAATGTCTGTTTCGACAACTCGCAAGACTAAGGATCCTTACATAATTATCAAGGCTCGTGACCTTATCAAACTTTTGTCAAGGAGTGTGCCAGTAACACAAGCAATTAAGATCCTAGATGATGAGATGCATTGTGATATAATTAAAATTGGAGACATCACCCGGAATAAGGAAAGATTTGTCAAACGTCGGCAGCGCTTATTGGGTCCTAATGGTTCAACACTCAAGGCAATTGAGCTATTGACTGGTTGCTATGTTCTTGTTCAGGGTAATACTGTTGCAGCCATGGGCTCATTTAAAGGTTTGAAACAAGTACGCAGAATTGCAGAGGATTGTATTCGTAATATACATCCGATTTATCATATCAAGGAACTCATGATAAAGCGGGAACTTGCAAAAGATCCAGAACTTGCAGAGGAAAATTGGGATAGGTTTTTGCCTAAGTTTAAGAAGAGAAATGTAAAGCAAAAGAAGCTGAAG

Fln Alignment:

sp_v1.1_unigene17209___EENGREQMQEERKGRYKGKHDKPKPWDNPDIDHWKVEKFNPSWNETGLLEVSSFSTLFPQYREKYLQDAWPTVTRALTEHGISCQLNLVEGSMSVSTTRKTKDPYIIIKARDLIKLLSRSVPVTQAIKILDDEMHCDIIKIGDITRNKERFVKRRQRLLGPNGSTLKAIELLTGCYVLVQGNTVAAMGSFKGLKQVRRIAEDCIRN-IHPIYHIKELMIKRELAKDPELAEENWDRFLPKFKKRNVKQKKLK
F6H683_______________ESNGEVEVERKEKTKHKGKHDKPKPWDDPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNVKQKKVK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
369		66	33		0.997452
557			10	90	0.90298
562		10		90	0.90298
563		10		90	0.90298
591			33	66	1.0
618			45	54	1.0
621		54		45	1.0
800		50		50	1.0
801	20			80	0.995493
803		80	20		0.995493
804		80	20		0.995493
805	80		20		0.995493
853		80	20		0.995493
861	20	80			0.995493
862		20	80		0.995493
945		16		83	0.994512
1372	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain