SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17204

Length: 523 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17204
CGTCGTGACCTTGGCTGTCACTCATTCCTTATGGCTGTCAAGCATACATGCAGCAGCCCATTCAGCCTACTGATTTGGGTGGTGCATATGCTCATTACTCCATTACAGGGATTCAAATGCCAACCATGTCACCACCTACCACCTAATAGGCCTGAGTATTGCTCACCACTATGCTGATATGGGGAGCAATAACGTTAGTAAATTTGTGAATTTTGAAGATTTTCTTCTAGCAAGTCATATTGCTGGGGCCTGTTAAATGAACTTTCTGGTGTATCCGGACAATTTAGGGATGTGTGTTTCGATTACTACCAAATGTACATTAGAATGCCATTTTCTCGATTTAGGTTGTTTTTTTAAGAAGTGACCAAATTTACTTTGACATTGTCTTGGCTAATCATGATGACTGATATTCTCTCTGTATTATTTAAAGACATATCTCCAGAAATATGACTCGGAAGGGATTCCGTAAGAAAAGTTGTACTATTGGACTTCAATGTTTAGTAAAACTGCTACTGAATTTTTT

Ace file of the UniGene sp_v1.1_unigene17204

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	3.0e-19	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	unknown [Picea sitchensis]	-	-	4.65106e-19	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	4.65106e-19	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	4.65106e-19	94%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	4.65106e-19	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	4.65106e-19	94%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	4.65106e-19	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN0

Fln msg: Overlapping hits, possible frame ERROR between 138 and 137, your sequence is shorter than subject: 86 - 575

Fln protein: RRDLGCHSFLMAVKHTCSSPFSLLIWVVHMLITPLQGFKCQPCHHxxHLIGLSIAHHYADMGSNNVSKFVNFEDFLLASHIAGAC*

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCTTATGGCTGTCAAGCATACATGCAGCAGCCCATTCAGCCTACTGATTTGGGTGGTGCATATGCTCATTACTCCATTACAGGGATTCAAATGCCAACCATGTCACCACxxxxxxCACCTAATAGGCCTGAGTATTGCTCACCACTATGCTGATATGGGGAGCAATAACGTTAGTAAATTTGTGAATTTTGAAGATTTTCTTCTAGCAAGTCATATTGCTGGGGCCTGTTAAATGAACTTTCTGGTGTATCCGGACAATTTAGGGATGTGTGTTTCGATTACTACCAAATGTACATTAGAATGCCATTTTCTCGATTTAGGTTGTTTTTTTAAGAAGTGACCAAATTTACTTTGACATTGTCTTGGCTAATCATGATGACTGATATTCTCTCTGTATTATTTAAAGACATATCTCCAGAAATATGACTCGGAAGGGATTCCGTAAGAAAAGTTGTACTATTGGACTTCAATGTTTAGTAAAACTGCTACTGAATTTTTT

Fln Alignment:

sp_v1.1_unigene17204___LMAVKHTCSSPFSLLIWVVHMLITPLQGFKCQPCxxxIGLSIAHHYADMGSNNVSKFVNFEDF
A9NXN0_______________VMAVRNTCSSPCSLLIWVVHMLIIPLQGFKCQPCxxxIGMSIAHHVDDKGSNNVSKFMDLKLF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
450	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain