SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17198

Length: 1716 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17198

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Drf_FH1 multi-domain protein	-	-	2.0e-16	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	protein	-	-	2.37325e-22	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	2.37325e-22	81%
Blast2go	metal ion binding	GO:0046872	Molecular Function	2.37325e-22	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heavy metal-associated domain, HMA	IPR006121	-	2.37325e-22	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRF2

Fln msg: your sequence is longer than subject: 309 - 150

Fln protein: MTKDEDFKLIKTQTWVLKVYIHCEGCKKKVKKVLQGIDGVYTTTIDAAEQKVTVTGSVASADVLLKRLQKSGKHAELWPMPQNKQQNNEPKNPKQQKEQKAGKDGGSDANEHAAAPKGGKVKGDDEKSGAGGNEGGGSGGKKRSGKKGGGGSGGGEVGRDEESGGDSEGKKGGDGGKQSNGGDGGAAEGGGGEASGGGSGKKKKGGKGGGGGAGGAGGGMMGESTSYDETELPGVPTVPGAGYYPMAGGGAYWENSVQRTGVVHNRQMLQYRPPYPPTVYAYPPNPADYSAVDPNMFSDENTSGCSIM*

Protein Length: 310

Fln nts: TGTACGAACAGTGGTAACCCTGTTGAGTATTCTTCCTTTAATTATAAAGCACGTCGTGACCTTGGCTGTCACTCAAGTGTTAGGTGCTTTTTATTGTAACAGACTGGACTCTGCTCATATCTTTTCATTTTGCTCAGCGCGCGCTGTTAAAAAGGAGCTGCCCTGCGTCTGACTGGCCGCTGTAGCCTATCAGAAAGATCAAATAACTAACTGCTGAGGGTTTGGAAGGCCGCCATTACGTGGGAGTTTTTGGCTCCCTCAAAAGGCACGAGGTAGAAATCCTTCTTAGTCAATTTTGGACTCAGACCGAGTCCCGGAGGAGGC_-_ATGACAAAGGATGAAGATTTCAAGCTTATTAAAACCCAGACTTGGGTTCTGAAGGTGTACATACACTGTGAGGGATGCAAGAAAAAGGTCAAGAAAGTTCTCCAGGGCATTGATGGTGTATACACTACCACCATTGATGCTGCCGAACAGAAGGTGACTGTTACAGGAAGTGTGGCTTCTGCTGATGTATTGTTGAAGAGGTTGCAGAAGTCCGGGAAGCATGCGGAGTTGTGGCCAATGCCTCAGAACAAACAGCAGAATAATGAGCCGAAGAATCCGAAGCAACAGAAAGAGCAGAAAGCGGGAAAAGACGGTGGCAGCGATGCAAATGAGCATGCAGCGGCGCCAAAAGGGGGAAAAGTTAAGGGAGATGACGAGAAATCTGGTGCTGGTGGAAATGAAGGAGGCGGCAGCGGTGGAAAGAAGCGGAGCGGCAAGAAAGGCGGTGGTGGAAGCGGAGGTGGGGAAGTGGGGCGGGATGAAGAAAGTGGCGGTGATAGTGAGGGTAAGAAGGGCGGAGATGGAGGTAAACAGAGCAATGGCGGGGACGGAGGAGCGGCTGAAGGCGGTGGTGGCGAGGCTAGTGGAGGCGGCAGTGGAAAGAAGAAGAAAGGCGGAAAAGGAGGAGGTGGTGGAGCTGGTGGTGCGGGTGGAGGAATGATGGGCGAATCTACTAGCTATGATGAAACTGAATTACCAGGAGTACCAACAGTGCCGGGGGCAGGATACTATCCGATGGCTGGCGGGGGAGCGTATTGGGAGAATTCTGTGCAGAGAACAGGTGTGGTCCACAACAGACAGATGTTACAGTATAGGCCTCCATATCCTCCCACGGTTTACGCTTACCCTCCAAATCCAGCAGATTATTCTGCGGTTGACCCCAACATGTTCAGCGACGAGAATACTAGCGGATGCTCCATTATGTAA___TTATTTTCTTTGCAGGTTTCTTTGTAGAGGAATAGGTTGGGGGTAATCAGGGAATGCGAAAATCCATCATTTTCTTTGCAGGTTTCTTTGTAGAAGAATAGTATTGGGGGTTTATCAGGGCATGCATGACTGAGTGGCCATAGAGTAGATTATTATTTGGAATGGTGGTTCTGAAACGCCATAGCCAGATTTAGCTGCTCGTAAATCTGCTAAAAGTAGTGATGGCGTACTAGTTTAGAGAAATACGGAGAGGCGTTGTTGTGTGTTGTAATAAATGTGGTCTGTCAAATGTAGGTAGGGGAACAGACAAGGGCCAGTATCTCGGCCACTCTTTTTTGCTGTATGTAATTATGCGAGTACTTGCAATAAGACTAAGACTGACTTCTGTATGGAAGTGTCAGATGGGAATCGAATATCGTATGACTGACTCTGTGCATATTTCAATTGCATGGCAGCACTGTATTG

Fln Alignment:

sp_v1.1_unigene17198___GGGMTKDEDFKLIKTQTWVLKVYIHCEGCKKKVKKVLQGIDGVYTTTIDAAEQKVTVTGSVASADVLLKRLQKSGKHAELWP
A9NRF2_______________GGGSKKHKKMKQL--QTVELKVRMDCDGCERKVKNAISSMKGVKSVDVSRKEQKVTVTGYV-DANKVLKKVKATGKRAEVWP

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
216		85		14	0.993533
219			71	28	1.0
220		28	71		1.0
223			28	71	1.0
224	28			71	1.0
225		28	71		1.0
226		28	71		1.0
227	71			28	1.0
228	71			28	1.0
232		71		28	1.0
234		71		28	1.0
237		28		71	1.0
241	28		71		1.0
379	35		64		1.0
829			66	33	0.997452
831	33		66		0.997452
832		33		66	0.997452
836	66	33			0.997452
838			66	33	0.997452
839		33	66		0.997452
842	33		66		0.997452
844	66			33	0.997452
846	66		33		0.997452
849	33		66		0.997452
874	33	66			0.997452
978			83	16	0.994512
980		16	83		0.994512
981			83	16	0.994512
1017	90		10		0.90298
1018	90		10		0.90298
1481	89		10		1.0
1637	20	3		3	1.0
1640	12	4	76		1.0
1641	13		8	78	1.0
1642	80		14	4	1.0
1655	85		14		0.993533
1656		16		83	0.994512
1657		20	80		0.995493
1660	66			33	0.997452
1665	66	33			0.997452
1667			33	66	0.997452
1672	33			66	0.997452
1673	66		33		0.997452
1678	33			66	0.997452
1680	66		33		0.997452
1682		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain