SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17190

Length: 999 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17190

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	55%
Blast2go	signal recognition particle subunit	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	66%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HG38

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 97 aas, your sequence is shorter than subject: 331 - 673

Fln protein: RRDLGCHSNILKQKLADAPSIAVATNNLIALKGAKDVFDGLKKFDKLIDKSGGVQGLQLADSLEYKLSARQKEAIYCNRALLLLNANKLDQARELILTLINMFPDSVTPTLLQASLLIKENKSNQAEELLGKMTEKYPMKSTFSLLLRAQVAAAASHYQVAIESLECITEIKHRPGTVATLVSLKEKAGDIDGAEAVFDAAIEWWSSNMGEDQHTLESIMQEAASFKLKHKKVKAAAGLFEQLVKSTSPLVRSEALNGLVSTTAHTDIAKAEIYEKQLPPLPGLSSVDIVALEQTAGVHPATSIGKHPRGAEYAAKSSGEQDDKKKTTGH*

Protein Length: 332

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATATTCTAAAACAGAAGCTAGCTGATGCTCCATCAATTGCAGTTGCAACAAATAATCTCATTGCACTGAAGGGTGCCAAGGATGTGTTTGATGGATTAAAGAAGTTTGACAAATTAATTGACAAGAGTGGTGGAGTTCAAGGATTACAGCTTGCTGATAGCCTTGAGTATAAGCTTTCTGCTAGACAGAAGGAAGCAATTTACTGTAATCGTGCACTGCTGTTACTAAATGCAAACAAGTTAGATCAGGCTCGGGAACTTATATTGACCCTTATCAACATGTTCCCAGATAGCGTGACACCGACTTTACTTCAAGCATCGTTGTTAATCAAAGAGAACAAATCTAATCAAGCAGAAGAACTTTTAGGAAAAATGACTGAAAAGTATCCAATGAAATCAACATTTTCTCTTCTTTTACGTGCCCAAGTTGCCGCAGCTGCGAGTCATTATCAGGTTGCTATTGAATCTTTGGAGTGCATAACTGAAATAAAACACCGGCCTGGAACTGTTGCTACATTAGTATCTTTAAAAGAGAAGGCAGGTGATATTGACGGGGCAGAGGCTGTCTTTGATGCTGCTATAGAGTGGTGGAGCAGCAACATGGGAGAAGATCAACACACATTGGAATCAATAATGCAGGAAGCAGCCTCTTTCAAGCTCAAACACAAGAAGGTAAAAGCAGCAGCTGGTTTGTTTGAACAGCTTGTGAAAAGCACTTCACCTCTTGTTCGTTCAGAAGCTTTGAATGGGCTTGTATCTACTACAGCTCATACAGATATTGCAAAAGCAGAAATCTATGAAAAGCAGCTGCCTCCTCTTCCAGGCCTATCTAGTGTTGATATAGTAGCCTTAGAACAAACTGCTGGTGTGCATCCTGCCACTTCGATAGGAAAACACCCTCGAGGTGCAGAATATGCTGCTAAAAGTTCAGGAGAGCAGGATGATAAAAAGAAAACCACAGGCCACTGAGACTGC

Fln Alignment:

sp_v1.1_unigene17190___HSNILKQKLADAPSIAVATNNLIALKGAKDVFDGLKKFDKLIDKSGGVQGLQLADSLEYKLSARQKEAIYCNRXXXXXXXXXXDQARELILTLINMFPDSVTPTLLQASLLIKENKSNQAEELLGKMTEKYPMKSTFSLLLRAQVAAAASHYQVAIESLECITEIKHRPGTVATLVSLKEKAGDIDGAEAVFDAAIEWWSSNMGEDQHTLESIMQEAASFKLKHKKVKAAAGLFEQLVKSTSPLVRSEALNGLVSTTAHTDIAKAEIYEKQLPPLPGLSSVDIVALEQTAGVHPATSIGKHPRGAEYAAKSSGEQDDKKK
F6HG38_______________YTGIINRNLADESSLAVAVNNLVALKGPKDISDSLRKLDRLMEKGNGAQSFQLSNGLESKLSPKQRETIYTNRVLLLLHANRMDQARELVAALPDMFADSVMPVLLQAAVLVRENKSGKAEEILGQFAEKFPDKAKVVLLARAQIAAVAGHPQIAAESLSKIADIQHLPATVATIVSLKERAGDIDGAEAVFDSAIQWWSNAMTED-NKLTVIMQEAASFKLKHGREKEAARLYEELVKSHGSV---QALIGLVTTAARVDVDKAEAYEKQLKPLPGLKGVDVESLERTSGAKHIQSDSRVGITEAYEESKNKEKAKKKR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
368		40		60	1.0
425	88	11			0.923564
462		88		11	0.923564
631	68		31		1.0
967		10		90	0.90298
971	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain