SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17184

Length: 2579 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17184
CGTCGTGACCTTGGCTGTCACTCAGTTTCCGTTTTTATGATGCAGTATCCGTCGTAAATCGTTCTTGGAGAGCTCTGGTTACGATCCGGGGACGTACGCCATCGTTCCATCGACATCGAGCTCACGAAACCAAAGAGTAGTGTTGAAAAGATGGTGAGATTGGGGACGTATGCAGCGGCGAGTGCAGTGGGAGCAGTGGCAGTGATCTATCATGCGTTTCACAGCCGGGGACAATTCTATCCGGCCATGGTTTATCTTTCCACTTCAAATATCAACCGTGTGCTTCTGTTTAACATGTGGTTGGTGATGATGTGCTTCATGTGGCAGCTAGTTAAGACCCTATTTCTCGGACCCCTTCGTGAAGCTGAAGTAGAACGGTTAAATGAGCAGTCATGGCGAGAGGTTATGGAGATTTTGTTTGCAATTACTATTTTCCGCGACGAGTTCTCTATCACTTTTTTGGCAATGGTGACGGTTTTGCTGTTGATTAAGGCACTTCATTGGCTGGCGCAAAAGAGGGTCGAGTATATCGAAACGACACCAACTGTATCCCGCTTGTCTCATTTTCGGATAATAAGCTTCATGGCATTTTTGCTCGCCCTGGATTGCGTTTTTCTGTATAATTCTCTATCATATTTGTTGAGAACCTATCGACCATCAGTGGAGCTATTCTTTTCATTTGAGTACATGATCTTGGCCACGACAACAATATCAACGTTCTTGAAGTATGTCTTTTATCTGGGTGATGTGCTTATGGAAGGACAATGGGAAAGTAAAGCAGTTTTTACCTTTTATTTGGAACTTGTCAAGGATCTGCTTCATCTTTCTTTGTACCTGTTCTTCTTCCTCGTCATATTTATAAACTATGGCCTACCATTACACTTGATACGGGAACTCTATGAAACATTTCGTAATTTTAAGTCCCGGGTTGCTGACTTTATAAGATACCGGAAAATTACATCGAACATGAATGATCGATTTCCAGATGCAACTGCCGAAGAACTTGGACAAAGTGATGCCACATGCATTATATGTCGTGAGGAAATGGTTGCAGCGAAAAAACTACCATGTGGACACCTATTCCATGTACATTGTCTACGATCCTGGCTGGAGAGACAACAGACTTGTCCTACATGCAGGTCTCCAGTTATTGCTTCAGAAACTGGAGCGGCAACATTTGGAGCAGAGCGGGGTGTACAGCCTGAACAGCAACGTGCTGGAACAGAAGGTGGACAGCCGGGGTTACAAGCCAATGTTGGATTGCTAAATGCACCGCGTCAAGGTCAGGAGGCGAATAGTTCTATCAACCAGCATCAAGCAAGAATTCAAGCTGCTCTTGCAGCTGCTGCCCAGTATGGAAATTCTTTTGTATATCCTGCAGCACAGACTGGCACAGTTAATTTTTTTCCAGGGTATGTGTTTGTTCCCCAGCCATATGTGGTCCAAGGAGTTGATGCTGCACGGAATGTTGGAACTTCTGGAGAGGGTCCTGGAAGGGGAGCTAATAGTGATGCTTTGATGAGAAATTTACCCATGGATGAGCAGATGCGTTTTGGGATGCAAAGATGGTTACAATTTCAATCTCAAATGTTAGCAGCACAAAGGACTTCAGCTTTCATGGGAAACAACTTGGCCTCTCTGCAAGTACCTTTGTATCTTCCCAATCAGGCCAATATAAGCCACTTAAATAGGAAACCTCCAGCTATGAGTGCTGCCCAAGATGATAATTCACAAATTCCTTCATCCAGTTCACAATCTGTTGATCCAGCAATGAATAACTGTTCGGGATTATTGAACATTCAGCAGATGTTATTGAGACAAAGGATAGAGGCATTGCAGCACGAGCTACAATCTGTTTTGCAACTGCAGAGTTCTCTCAGCTCAACCCCCCAGGGAAATACTGATGTTTCTACTTCAAGGACTGAGGATATAGTTGAAGGAAAGAACCCTCCTTCTGGAGATGCCTCTGGTCATGTAGGGGATAGAGGGAAGGGCCCTATTTCTAGCGAGTTCAATCAGGAAAGTGTGTCAGCATCTTCTCCAATTGAATTATCTTCCAAGGATGCCTCAGATTTTGTTGAAGTGGCGAAACAACCATCACCTAGTCACTCAGAGATTGAAGAGATTCAAACTTAGAAATAGAGACTATTTGTTTTATATCTGCAACATTAGAAATTCTTGCTTTGAGTAAATTTAAACAGGCAAAATCTGAGTGGGGGCCAACAATGAGTTTGTGCAGCATCGGGACCTAAAGATGCTTATGGTTAGATAGTAGAAAGTGAAATCTGTTTGGATTTTCTTGTTGGCTGCCAATTTATAAATTTTCCTAAACGTTATTCGCTGAGTTTACTGCAACATTGATGAAGATGATGCACTGGTATCCTGCATTATATGGGGTGTCCAATTAATGCAACTAATCTTCTTTGTACTAATTTGTGTCTCCATGCTCGTTGCCATGACAGAAAAAAATGTATTCTGAGTGGTCACTTGAGATTGAGCCGACATGTTATTTGTGTTGTCTCTGATCACGATATAAATGGTACTGCATTCTAACATGGAACTTTTTGATTTTGTTTAGT

Ace file of the UniGene sp_v1.1_unigene17184

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S201_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	protein binding	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	endomembrane system	GO:0012505	Cellular Component	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	78%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	78%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLN0

Fln msg: your sequence is longer than subject: 662 - 334

Fln protein: MVRLGTYAAASAVGAVAVIYHAFHSRGQFYPAMVYLSTSNINRVLLFNMWLVMMCFMWQLVKTLFLGPLREAEVERLNEQSWREVMEILFAITIFRDEFSITFLAMVTVLLLIKALHWLAQKRVEYIETTPTVSRLSHFRIISFMAFLLALDCVFLYNSLSYLLRTYRPSVELFFSFEYMILATTTISTFLKYVFYLGDVLMEGQWESKAVFTFYLELVKDLLHLSLYLFFFLVIFINYGLPLHLIRELYETFRNFKSRVADFIRYRKITSNMNDRFPDATAEELGQSDATCIICREEMVAAKKLPCGHLFHVHCLRSWLERQQTCPTCRSPVIASETGAATFGAERGVQPEQQRAGTEGGQPGLQANVGLLNAPRQGQEANSSINQHQARIQAALAAAAQYGNSFVYPAAQTGTVNFFPGYVFVPQPYVVQGVDAARNVGTSGEGPGRGANSDALMRNLPMDEQMRFGMQRWLQFQSQMLAAQRTSAFMGNNLASLQVPLYLPNQANISHLNRKPPAMSAAQDDNSQIPSSSSQSVDPAMNNCSGLLNIQQMLLRQRIEALQHELQSVLQLQSSLSSTPQGNTDVSTSRTEDIVEGKNPPSGDASGHVGDRGKGPISSEFNQESVSASSPIELSSKDASDFVEVAKQPSPSHSEIEEIQT*

Protein Length: 663

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCCGTTTTTATGATGCAGTATCCGTCGTAAATCGTTCTTGGAGAGCTCTGGTTACGATCCGGGGACGTACGCCATCGTTCCATCGACATCGAGCTCACGAAACCAAAGAGTAGTGTTGAAAAG_-_ATGGTGAGATTGGGGACGTATGCAGCGGCGAGTGCAGTGGGAGCAGTGGCAGTGATCTATCATGCGTTTCACAGCCGGGGACAATTCTATCCGGCCATGGTTTATCTTTCCACTTCAAATATCAACCGTGTGCTTCTGTTTAACATGTGGTTGGTGATGATGTGCTTCATGTGGCAGCTAGTTAAGACCCTATTTCTCGGACCCCTTCGTGAAGCTGAAGTAGAACGGTTAAATGAGCAGTCATGGCGAGAGGTTATGGAGATTTTGTTTGCAATTACTATTTTCCGCGACGAGTTCTCTATCACTTTTTTGGCAATGGTGACGGTTTTGCTGTTGATTAAGGCACTTCATTGGCTGGCGCAAAAGAGGGTCGAGTATATCGAAACGACACCAACTGTATCCCGCTTGTCTCATTTTCGGATAATAAGCTTCATGGCATTTTTGCTCGCCCTGGATTGCGTTTTTCTGTATAATTCTCTATCATATTTGTTGAGAACCTATCGACCATCAGTGGAGCTATTCTTTTCATTTGAGTACATGATCTTGGCCACGACAACAATATCAACGTTCTTGAAGTATGTCTTTTATCTGGGTGATGTGCTTATGGAAGGACAATGGGAAAGTAAAGCAGTTTTTACCTTTTATTTGGAACTTGTCAAGGATCTGCTTCATCTTTCTTTGTACCTGTTCTTCTTCCTCGTCATATTTATAAACTATGGCCTACCATTACACTTGATACGGGAACTCTATGAAACATTTCGTAATTTTAAGTCCCGGGTTGCTGACTTTATAAGATACCGGAAAATTACATCGAACATGAATGATCGATTTCCAGATGCAACTGCCGAAGAACTTGGACAAAGTGATGCCACATGCATTATATGTCGTGAGGAAATGGTTGCAGCGAAAAAACTACCATGTGGACACCTATTCCATGTACATTGTCTACGATCCTGGCTGGAGAGACAACAGACTTGTCCTACATGCAGGTCTCCAGTTATTGCTTCAGAAACTGGAGCGGCAACATTTGGAGCAGAGCGGGGTGTACAGCCTGAACAGCAACGTGCTGGAACAGAAGGTGGACAGCCGGGGTTACAAGCCAATGTTGGATTGCTAAATGCACCGCGTCAAGGTCAGGAGGCGAATAGTTCTATCAACCAGCATCAAGCAAGAATTCAAGCTGCTCTTGCAGCTGCTGCCCAGTATGGAAATTCTTTTGTATATCCTGCAGCACAGACTGGCACAGTTAATTTTTTTCCAGGGTATGTGTTTGTTCCCCAGCCATATGTGGTCCAAGGAGTTGATGCTGCACGGAATGTTGGAACTTCTGGAGAGGGTCCTGGAAGGGGAGCTAATAGTGATGCTTTGATGAGAAATTTACCCATGGATGAGCAGATGCGTTTTGGGATGCAAAGATGGTTACAATTTCAATCTCAAATGTTAGCAGCACAAAGGACTTCAGCTTTCATGGGAAACAACTTGGCCTCTCTGCAAGTACCTTTGTATCTTCCCAATCAGGCCAATATAAGCCACTTAAATAGGAAACCTCCAGCTATGAGTGCTGCCCAAGATGATAATTCACAAATTCCTTCATCCAGTTCACAATCTGTTGATCCAGCAATGAATAACTGTTCGGGATTATTGAACATTCAGCAGATGTTATTGAGACAAAGGATAGAGGCATTGCAGCACGAGCTACAATCTGTTTTGCAACTGCAGAGTTCTCTCAGCTCAACCCCCCAGGGAAATACTGATGTTTCTACTTCAAGGACTGAGGATATAGTTGAAGGAAAGAACCCTCCTTCTGGAGATGCCTCTGGTCATGTAGGGGATAGAGGGAAGGGCCCTATTTCTAGCGAGTTCAATCAGGAAAGTGTGTCAGCATCTTCTCCAATTGAATTATCTTCCAAGGATGCCTCAGATTTTGTTGAAGTGGCGAAACAACCATCACCTAGTCACTCAGAGATTGAAGAGATTCAAACTTAG___AAATAGAGACTATTTGTTTTATATCTGCAACATTAGAAATTCTTGCTTTGAGTAAATTTAAACAGGCAAAATCTGAGTGGGGGCCAACAATGAGTTTGTGCAGCATCGGGACCTAAAGATGCTTATGGTTAGATAGTAGAAAGTGAAATCTGTTTGGATTTTCTTGTTGGCTGCCAATTTATAAATTTTCCTAAACGTTATTCGCTGAGTTTACTGCAACATTGATGAAGATGATGCACTGGTATCCTGCATTATATGGGGTGTCCAATTAATGCAACTAATCTTCTTTGTACTAATTTGTGTCTCCATGCTCGTTGCCATGACAGAAAAAAATGTATTCTGAGTGGTCACTTGAGATTGAGCCGACATGTTATTTGTGTTGTCTCTGATCACGATATAAATGGTACTGCATTCTAACATGGAACTTTTTGATTTTGTTTAGT

Fln Alignment:

sp_v1.1_unigene17184___DATCIICREEMVAAKK---LPCGHLFHVHCLRSWLERQQTCPTCRSPVIASETGAATFGAERGVQPEQQRAG
A9NLN0_______________DTECAVCREHLVVGDKMQELPCKHLFHPNCLKPWLDEHNSCPICRYE-LQTDDLEYELKKEREKEAEEERKG

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
15	11	88			0.923564
19		88	11		0.923564
20	88		11		0.923564
21		88	11		0.923564
24	88	11			0.923564
118	11		88		0.923564
319	56	44			1.0
432		12		87	0.999964
433			12	87	0.999964
438		87		12	0.999964
442		12	87		0.999964
443	87			12	0.999964
444			87	12	0.999964
445			12	87	0.999964
446			12	87	0.999964
449		87	12		0.999964
647		90		10	0.90298
744			42	57	1.0
1123	80		20		0.995493
1264		83		16	0.994512
1302	20			80	0.995493
1307	50	50			1.0
1348		33	33		0.997753
1455			20	80	0.995493
1457	80		20		0.995493
1537	40		60		1.0
1618			40	60	1.0
1795		10	5	85	0.999793
1851	91		8		0.999766
2090	40		60		1.0
2093	40			60	1.0
2094	40	55			1.0
2095	40		60		1.0
2096		36		63	1.0
2097	40	5	55		1.0
2101	36			63	1.0
2103	5	36	57		1.0
2104	42		57		1.0
2108	36			5	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain