SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17172

Length: 1043 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17172

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1]	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transketolase.	EC:2.2.1.1	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	87%
Blast2go	Carbon fixation in photosynthetic organisms	00710	87%
Blast2go	Biosynthesis of phenylpropanoids	01061	87%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	87%
Blast2go	Biosynthesis of plant hormones	01070	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transketolase.	EC:2.2.1.1	-	0.0	85%

Source	KEGGs	Term	Identity
AutoFact	Pentose phosphate pathway	00030	85%
AutoFact	Carbon fixation in photosynthetic organisms	00710	85%
AutoFact	Biosynthesis of phenylpropanoids	01061	85%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	85%
AutoFact	Biosynthesis of plant hormones	01070	85%
AutoFact	Metabolic pathways	01100	85%
AutoFact	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	reductive pentose-phosphate cycle	GO:0019253	Biological Process	87%
Blast2go	response to salt stress	GO:0009651	Biological Process	87%
Blast2go	pentose-phosphate shunt, oxidative branch	GO:0009051	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	transketolase activity	GO:0004802	Molecular Function	87%
Blast2go	metal ion binding	GO:0046872	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transketolase, N-terminal	IPR005474	-	0.0	87%
Blast2go	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	0.0	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ72

Fln msg: Distance to subject end: 455 aas, your sequence is shorter than subject: 303 - 751

Fln protein: MASSLTVSQASAGSVTATATALNNAPQSERLISSASPAGFGFSKFAGLKLRSHGKVACSSRSSSHRRLRSSAPKVVRAAAVETLETTSTGLVEQSINAIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGFDSVKEEDLKGFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVGMYHHHGGCEVGFVLSERYEVKGIDNLRIVDASTFTDSPATNPQATTMMLGRYVAVKILQE

Protein Length: 304

Fln nts: AGGCAGTCTCAGAAGCAGTGGTATCTTTGCAGTGTACATGGGGCGGATCGCAGACGCAAAGCTTAAATTTTGAGCATTTGGGTAGCTTAAGCTGCCGCGCATCTGAACTGGGTTGTTCTTGGATTCCTTCGCC_-_ATGGCCTCTTCCTTGACTGTCTCACAGGCTTCTGCTGGCTCTGTCACTGCCACCGCCACCGCATTGAATAATGCCCCACAGTCTGAGCGCCTGATCTCCTCTGCCTCGCCAGCGGGGTTCGGCTTCAGTAAATTCGCAGGATTGAAGCTTCGGTCACATGGTAAGGTTGCCTGCTCTTCCAGAAGCTCGTCCCATAGGCGCCTGAGATCGTCGGCCCCCAAGGTCGTCCGGGCTGCTGCAGTTGAGACCCTGGAGACCACCAGTACTGGGCTGGTGGAGCAATCGATCAATGCTATCCGTTTTCTGGCCATCGATGCTGTCGAGAAGGCCAATTCTGGGCACCCTGGGTTGCCTATGGGCTGCGCCCCAATGGGTCACATATTGTATGATGAGGTCATGAAGTATAATCCCAAGAATCCCTATTGGTTTAACCGGGATCGGTTTGTGCTGAGCGCTGGACATGGGTGCATGTTGCAGTACGCTCTCTTGCATCTGGCGGGCTTCGACAGTGTGAAGGAAGAAGATTTGAAGGGCTTCCGTCAGTGGGGGAGCAGAACGCCAGGACATCCTGAAAATTTCGAGACTCCTGGTGTGGAAGTCACAACTGGACCACTTGGTCAAGGAATTGCTAATGCAGTTGGTTTGGCACTTGCTGAGAAACATCTAGCGGCTAGATACAATAAGCCAGACTCCACTATTGTTGATCATTACACATATTGTATTGTTGGAATGTATCATCACCATGGAGGCTGTGAAGTTGGGTTTGTGCTTAGCGAGAGGTATGAGGTGAAGGGAATTGATAATCTGAGGATTGTGGACGCGTCAACGTTCACAGACAGTCCTGCCACCAACCCACAAGCAACCACTATGATGCTCGGCAGATATGTAGCTGTGAAGATTCTTCAAGAGT

Fln Alignment:

sp_v1.1_unigene17172___LNNAPQSERLISSASPAGFGFSKFAGLKLRSHGKVACXXXXXXXXXXXXXAPKVVRAAAVETLETTSTGLVEQSINAIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGFDSVKEEDLKGFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVGMYHHHGGCEVGFVLSERYEVKG
C0PQ72_______________LNNAIQSERLSSSASPAGFGFSKFAGLKLRSNGKVACSSRSSSQRRLRSSAPKVVRAAAVETLEAISTGLIEKSINAIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLYLAGYDSVKEEDLKGFRQWGSKTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVG-----DGCQMEGISNEACSLAG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
685			57	42	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain