SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17168

Length: 1501 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17168

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleic acid binding; K12839 survival of motor neuron-related-splicing factor 30	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	67%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Tudor domain	IPR002999	-	75%
Blast2go	Survival motor neuron	IPR010304	-	75%
Blast2go	Tudor subgroup	IPR018351	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C6TAT4

Fln msg:

Fln protein: MMQGTDELSIEELKLNLHTYREQLQQVTELLAADPRSPEFAEMEKELREVIELTEELLATAKQAESAGAGAKTDPSVSYAKKQSQTRGSPNQSLDEAMDQGYRFPVGAKVQAVWSGDGEWYDATVEGVTANGYFIAYDDWGNEEEVDFDNVREKQEGAVDALLEAEKQAEATKQAIKRKIAQAADANFQSRDLPAKLRINPEDPEDVKAAKKKKIHAFKSKLRLEQLEVTQNKRQNAWQQFQTTKGKSKKIGFFSGRKKESIFKSPDDPKGKVGVTGSGKGITEFQKREKHLHLREGLEEVED*

Protein Length: 305

Fln nts: ATGGGGATTTTATAGTAAGTGGTGTCTCATGAGTATAATTCATGTCGGGGGCAACAAGGTCTATATATACGTCGTGACCTTGGCTGTCACTCAGGTGTGCAATTTATTTCATTGGCCATTGCTACATCGCTCCAAAATCTGTTTTCGCGGTTGCGAGTTTCTTCTTAATCACATCTGCATTTACTGGTCCACTGTTTGAAGCTTCGATTAACTAAGGCTTCAGAGGGTTTTCAAAACATTTTTGAAGTATCTGCTGGGGTTAGTTTGATCAAAAGCAAAGAGGGATTGTCAAGGGCAAAGGCGTTCGATCTCTGAATCCCTTTCTATTCATTACTGGAAGAGAAAGGAAGAATACTAGGTTAAA_-_ATGATGCAAGGAACGGACGAATTGAGCATTGAGGAGCTCAAGCTCAACCTCCACACTTACAGAGAGCAGCTTCAACAGGTCACAGAGCTATTAGCGGCAGATCCAAGAAGTCCCGAGTTTGCGGAAATGGAGAAAGAGCTGCGAGAGGTGATCGAGCTTACAGAGGAACTGCTAGCAACAGCAAAGCAGGCTGAATCAGCTGGTGCAGGGGCAAAAACTGATCCTTCTGTTTCATATGCTAAAAAGCAATCTCAGACTAGAGGGAGCCCAAATCAGTCCCTAGATGAAGCTATGGACCAGGGTTACAGATTTCCTGTTGGTGCTAAAGTTCAAGCTGTTTGGAGTGGTGATGGAGAATGGTATGATGCTACAGTTGAGGGAGTTACCGCCAATGGATACTTTATTGCCTACGATGATTGGGGTAATGAGGAAGAGGTTGATTTTGATAATGTAAGGGAGAAACAAGAGGGAGCTGTAGATGCGTTGCTAGAGGCTGAAAAACAAGCTGAAGCCACCAAACAGGCCATCAAACGAAAAATTGCACAAGCTGCTGATGCAAATTTCCAGTCTCGTGATTTACCTGCTAAGCTTCGAATTAATCCTGAAGATCCCGAGGATGTGAAAGCGGCAAAGAAAAAGAAAATCCATGCTTTTAAGTCAAAGTTACGCCTTGAACAACTAGAGGTGACTCAAAATAAGCGCCAGAATGCCTGGCAGCAGTTCCAAACAACAAAAGGGAAATCTAAGAAGATTGGATTTTTCTCTGGGAGAAAGAAAGAGAGTATTTTTAAATCACCAGATGATCCAAAGGGTAAAGTTGGTGTAACAGGTAGTGGGAAGGGCATTACTGAGTTCCAAAAACGAGAAAAACACCTGCACTTGAGAGAAGGTCTAGAAGAAGTTGAAGACTAA___AGATGGGGTTGTGTGAGCCATCATTATCTCCATTAATGTGACATAATCTTTCTTTGGTGTAACGTTCTTGTCTTTTTGGTACATAATTTTTTGAGCAGGGTAGTTGCTTCTTTTCGAAGCTCCGTTAAGAGAAGTAATTATGCTATTGCCTAAAATGGCATTGCCATGATTCTACGCTTTATTAGTGCATATTCAGTTGCTGGCCTGTATATTTACTTCTGAGAA

Fln Alignment:

sp_v1.1_unigene17168___QGTDELSIEELKLNLHTYREQLQQVTELLAADPRSPEFAEMEKELREVIELTEELLATAKQAESAGAGAKTDPSVSYAKKQSQTRGSPNQSLDEAMDQGYRFPVGAKVQAVWSGDGEWYDATVEGVTANGYFIAYDDWGNEEEVDFDNVREKQEGAVDXXXXXXXXXXXXXXXXXXXXXXXXXXNFQSRDLPAKLRINPEDPEDVXXXXXXXXXXXXXXLRLEQLEVTQNKRQNAWQQFQTTXXXXXXXXXXXXXXXESIFKSPDDPXXXXXXXXXXXXITEFQKREKHLHLREGLEEVED
C6TAT4_______________QGVDEVSIEELASNLSLYKDQLNQVRELLNDDPANSEYVDMERELSEVIALTEELLATAKQNEISA------PPNNAAASPTLSIHNENQLLDSSSDHQEKLPVGTKVQAVWSEDGEWYDATIEAYTPNGYYVSYDNWGNKEEVDPANVRSIQEGSVDALLEAERVAEATKQAIKRKIAQAASIDLQSRSLPTKLRIEADDPEDVKASKRKKIHAFKSKMRMEQLEVTQNKRQNAWQQFQSTKGKAKKIGFFFGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQKREKHFHLKDGTVENDD

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
405	80		20		0.995493
406	71	14		14	0.984337
409		14	14	71	0.984337
410		71		28	1.0
411	71		14	14	0.984337
412	85		14		0.993533
413		85	14		0.993533
417		88	11		1.0
418	88		7	3	0.998862
423		7		92	0.999602
593		18		81	0.999994
881		85		14	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain