SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17150

Length: 891 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17150

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nuclease	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	dnase 2	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	77%
Blast2go	nuclease activity	GO:0004518	Molecular Function	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRF3

Fln msg: Separated hits, possible frame ERROR between 306 and 329, your sequence is shorter than subject: 247 - 336

Fln protein: IGSITLQRHPKVDVEGLLSFYGLPYPTAVSERVAKKRPDDVPKFELYTLPVNAKDVGDGDGLTVYVDTRNPRESADVPISVHEGTIQRREARARRDYEIADxxxxxxxxxGYRIFDDGDILAHIYRIRLRGVDAPELKMPYGEEAKQALLNLVQGEQLRVVVYGNDQYDRLVGDIYSNDVFIQELLLKKGCAWHYKKYDQRPEFAMWEKEARAARVGLWASSNPQKPWEWRKIHKEMQNNSRRGKQ*

Protein Length: 248

Fln nts: ATTGGGTCAATAACATTGCAAAGACATCCTAAGGTCGATGTAGAGGGCCTGTTATCATTTTATGGTCTTCCATACCCTACTGCGGTGTCAGAAAGGGTTGCAAAGAAACGGCCAGACGATGTACCGAAGTTTGAGCTGTATACTCTTCCAGTAAATGCAAAAGATGTTGGAGATGGTGATGGCCTCACTGTATACGTGGATACACGGAATCCTAGAGAGTCAGCGGATGTCCCTATCTCGGTGCACGAGGGAACTATTCAAAGGCGCGAAGCTCGTGCAAGACGGGATTATGAGATAGCTGACGCxxxxxxxxxxxxxxxxxxxxxxxxAGGATATCGGATATTCGATGATGGAGATATACTTGCGCACATATATCGAATTCGGCTGAGAGGAGTTGATGCACCAGAGCTCAAAATGCCTTACGGGGAGGAGGCAAAACAGGCATTGCTCAATCTGGTACAGGGGGAACAATTGCGAGTCGTTGTCTATGGCAACGACCAATATGATCGGTTGGTGGGAGATATTTACAGCAACGACGTTTTTATTCAGGAACTTCTTTTAAAGAAAGGATGTGCATGGCACTACAAAAAGTATGATCAGCGTCCAGAGTTTGCCATGTGGGAGAAAGAGGCCCGTGCTGCCCGTGTTGGATTATGGGCTTCATCCAATCCTCAGAAACCTTGGGAGTGGAGGAAAATTCACAAAGAAATGCAAAACAATTCAAGGAGGGGTAAACAATGAAGTTTTAAGGTTTCGATTTTTAGTGCTGCTTGTGGACAGTCTTAATAGGGCTGCTGTATTTTTACAGATAATTTATTTATGATCATTGACTTGTTTTTTCAAGTCCTTGAGTATTGGGAACGTTGGTATGGATTTCAACATTAACCAGAAAC

Fln Alignment:

sp_v1.1_unigene17150___TLQRHPKVDVEGLLSFYGLPYPTAVSERVAKKRPDDVPKFELYTLPVNAKDVGDGDGLTVYVDTRNPRESADVPISVHEGTIQRREARARRDYEIADAxxxxxxxxGYRIFDDG-----DILAHIYRIRLRGVDAPELKMPYGEEAKQALLNLVQGEQLRVVVYGNDQYDRLVGDIYSNDVFIQELLLKKGCAWHYKKYDQRPEFAMWEKEARAARVGLWASSNPQKPWEWRKIHKE
A9NRF3_______________TLQRHHKVDVEGLLSFYGLPYPTAVPGRVAQKRSNDVLKFELYTLQVKAGDVVDGDGLNVYVDTKNARESADVPISVQEATIQRREARARRDYVTADAxxxxxxxxGYRVFDGSRNTHEDILAHKYRIRLRGVDAPEHGQSYGEEAKQILLNLVKGKPLQILVYDKDQYGRLVGDIYSEGVFIQEVLLKKGSVWHYKKYDQRPELAMWEKEARAAHVGLWASSNPQKPWEWRKIRRE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
480		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain