SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17143

Length: 1064 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17143

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH	-	-	98%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	98%
Blast2go	ribulose bisphosphate carboxylase small chain 1a	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribulose-bisphosphate carboxylase.	EC:4.1.1.39	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	91%
Blast2go	Carbon fixation in photosynthetic organisms	00710	91%
Blast2go	Metabolic pathways	01100	91%

Source	GOs	Term	Type	Identity
Blast2go	reductive pentose-phosphate cycle	GO:0019253	Biological Process	91%
Blast2go	photorespiration	GO:0009853	Biological Process	91%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	91%
Blast2go	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	91%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	0.0	91%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
55		66		33	0.997452
73			33	66	0.997452
76	71		28		1.0
77			28	71	1.0
79	20		26	53	1.0
80			26	73	1.0
150		91	8		0.999766
607	12		87		0.992554
609	12		87		0.992554
614	80	20			0.995493
733	14			85	0.993533
925	2			97	0.910981
1018		30		69	1.0
1021	12			87	0.999964
1022	12			87	0.999964
1029		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain