SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17138

Length: 1562 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17138

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mod_r multi-domain protein	-	-	4.0e-36	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	ESCRT I complex	GO:0000813	Cellular Component	0.0	76%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Modifier of rudimentary, Modr	IPR009851	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT76

Fln msg:

Fln protein: MFFKPWGTQQPTQQPAPNIPAQSSYQPSASTPSSSSAHPSTPTNPSSTGLAPHTRPAVVGSSTVESRPQSPSYSQPSPAAGASIIPLLRDKSVDELRKILSDKKVYNEVFHSIDQVKDQKALHAELRRETRQLARKNLEKENQMLELKNQCTVIRTTELATAEEKFHVLDKRVREAMSFLAPGVLLERLQEAAKAAEKESDDLHQELSDRKIELIDFIQKYKKLRTIYHRRTLLYLAAKHHVQANSAVK*

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGCCTTGTCTGCCACGTGTGATGCGAACTTTGCCTTCGTGTTCGTCGTGACCTTGGCTGTCACTCATTTTTCTGAGATTTCTTCGAGAGGAAGGCACATCAAGGAACTGCGAAGCGAGGGTTTGGGCGAGTTAACAGCCCATCTGAATATCAAACCCACACTTCTTTGTGATTTCCTGATAGCACTGCGCGTTGCCTTAACTGGGCGGCCATGAATGCCCTCGTAAAATAAATTTCATAGCGTTGTGAATTGCGATAACCGCTCCAGTTATTTTCTTTGTGTTCACTAAGCATAATAAATATCGGGAATTAAACCGATCCGGACAGTTCAGTGCCTGCCCCCCTGCATCCTTCGTTGGGTTTCGTTTTTTCAGGGCGCC_-_ATGTTTTTTAAGCCCTGGGGAACGCAGCAACCAACACAACAACCTGCTCCAAATATTCCAGCTCAGTCATCGTATCAACCTTCAGCATCAACTCCATCTTCAAGTTCAGCTCACCCTTCAACTCCAACTAATCCATCATCAACTGGGCTTGCACCGCACACAAGGCCAGCCGTTGTTGGAAGTTCCACTGTGGAGTCACGTCCTCAATCGCCATCTTATTCCCAGCCATCTCCAGCTGCTGGTGCAAGTATAATTCCTCTGTTGAGAGACAAAAGTGTCGATGAACTGAGGAAGATTTTGTCAGATAAAAAAGTCTACAATGAAGTTTTTCATTCAATTGACCAAGTCAAGGACCAGAAAGCTTTACATGCTGAGCTTCGGAGGGAGACAAGGCAACTCGCAAGGAAAAATCTGGAAAAAGAGAACCAAATGCTGGAACTTAAAAACCAGTGCACAGTTATAAGAACAACAGAGCTGGCAACAGCTGAGGAAAAGTTCCATGTGCTTGACAAGAGAGTAAGGGAAGCTATGAGCTTTCTTGCACCTGGAGTGCTACTTGAAAGGCTTCAAGAGGCAGCTAAAGCTGCTGAGAAAGAATCAGACGATTTACATCAAGAGCTTAGTGATAGAAAGATAGAGTTGATTGATTTTATCCAAAAATACAAAAAGCTTCGCACAATTTATCACAGGCGAACATTGCTATATTTAGCAGCAAAACACCATGTCCAAGCTAATTCTGCAGTAAAATGA___GGACATCGTTGTAAAGTGCTTAGAGAAAATTTGTGTGTGCTATAGGTGTAATTGTAAAAAATCAATTTACATGCAATTGCGAGCTACAGGTTGCCCTACAGGATAGATGCAGTTTCATCGGGAAGCTAGGTCCTAGATAAATATATATGCCATTTTTTCAATTTTTTGGGGCAAACATCAGTTGCAATTCTTGGAATATGTAATTCTTTATACAATAATTTATGTCTCTCAATATGTAATTCATGAGAATGTTGTACATGCATCTTAACACGCTATTAACAATCACGATTTACTCAACCTGTTAATGTGTCTTTAATGGTAAGTAGTGTCTTTTGTGCTCTCGATTTTGATTAAATGAATAGCATATTCGAAGCTTGGAAATTTACATAATGACACGTTATATGTTTG

Fln Alignment:

sp_v1.1_unigene17138___MFFKPWGT-QQPTQQPAPNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAPHTRPAVVGSSTVEXXXXXXXXXXXXXXXXXXIIPLLRDKSVDELRKILSDKKVYNEVFHSIDQVKDQKALHAELRRETRQLARKNLEKENQMLELKNQCTVIRTTELATAEEKFHVLDKRVREAMSFLAPGVLLERLQXXXXXXXXXSDDLHQELSDRKIELIDFIQKYKKLRTIYHRRTLLYLAAKHHVQANSAVK
A9NT76_______________MFFKPWGTPQQPTQQPAPNIPAQSLYQPSASTPSTSSARPSTPNNPSSTGLAPHTRPAVVGSSSVESRPQSPSYSQPSPAAGASIIPLLRDKSVDELRKILQDKKAYNEVFHSIDQVKDQKALYGELRRETRQLARKNLEKENQMLELKNQCTVIRTTELATAEEKFHALDKRVKEAISFLAPGVLLERLQEAAKAAEKESDDLHEELNDRKIEGTDFIQKYKKLRTIYHRRTLLYLGAKHHLQANSAVK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1426		25		75	1.0
1448	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain