SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17121

Length: 1365 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17121

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EXL2; EXL2 (EXORDIUM LIKE 2)	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	phi-1-like protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1J7

Fln msg:

Fln protein: MGSVNGMNGWWLFMALLGICSAMSSVRSMAEEVPAMQLIYHNGPLLSSDIDVHVVWYGKFSPVQRSITGDFLHSLGEEEEETLLRNQPSVKEWWKTTDVYREDALFSMSFAVATEKKKNEKIVLVNQTLDESYSLGKWLQRTHIEALVLRASVASNTLVPEKGIFLVLTAQDVVVERFCTSSCGFHSSVKGGKGRRSVSLPYAWVGNSVTQCPGQCAWPFHQPLYGPQTIPLVAPNGDVGVDGMIINIATVLVGTVTNPFNTGFFQGDAALPLEGVSACRGMYGRGAYPGYAGQLLVDETTGASFNARGLNGRMFLLPVMWDPLTKSCKTLV*

Protein Length: 334

Fln nts: AAGCAGTGGGTATCAACGTCGTGACCTATGGGTGTCACTGGGTAGAGCTCGGGGGTACCTTCAGGCATCCCTCCTGATCAAACTCTGGGCAGGGATTGGACTTCGTGCAGCTGCTCGTCTATTTGTTTAGGATTCGTTTCTGATCGGTTTGGGTAGGAAACGCTACGTTGATAATTCTTGTGCAAGCATTGTCATTAGAATC_-_ATGGGGTCGGTTAATGGCATGAATGGGTGGTGGTTGTTCATGGCTTTGTTGGGAATCTGTTCAGCTATGTCGTCGGTTAGGTCTATGGCAGAGGAGGTGCCGGCAATGCAGCTGATCTACCATAATGGGCCTCTGCTGAGCTCTGATATAGATGTTCATGTGGTTTGGTATGGAAAGTTCAGTCCGGTCCAGAGATCGATTACTGGGGATTTCTTGCACTCCCTGGGAGAGGAAGAAGAAGAGACATTACTGAGGAACCAACCATCTGTAAAGGAATGGTGGAAAACCACTGACGTTTACAGAGAGGATGCATTATTCAGTATGAGCTTTGCTGTAGCGACTGAGAAGAAGAAGAATGAGAAAATAGTGCTGGTGAATCAGACACTGGATGAGTCCTACAGCCTTGGAAAATGGCTACAGAGAACCCACATTGAAGCCCTGGTCCTCAGGGCATCTGTGGCCTCCAATACTTTAGTGCCCGAGAAAGGGATTTTCTTGGTCCTCACTGCCCAAGATGTTGTAGTAGAAAGATTCTGCACGAGCTCATGTGGGTTCCATTCTAGTGTAAAAGGCGGGAAGGGAAGGCGCTCAGTCTCTTTGCCATATGCATGGGTTGGGAACTCTGTAACACAGTGCCCTGGTCAGTGCGCTTGGCCTTTCCACCAGCCTCTCTACGGCCCTCAGACTATACCTCTGGTAGCCCCTAATGGTGATGTGGGCGTGGATGGTATGATCATAAATATCGCCACTGTGCTTGTGGGGACAGTTACAAATCCCTTCAATACTGGGTTTTTTCAAGGTGATGCTGCTCTGCCTCTGGAGGGTGTGTCTGCTTGCAGGGGAATGTATGGAAGAGGGGCATATCCCGGATACGCAGGCCAGCTCTTGGTAGACGAAACGACAGGAGCCAGCTTCAATGCTCGAGGGCTCAATGGCCGCATGTTCCTCCTTCCAGTCATGTGGGATCCTCTTACCAAATCGTGCAAGACCTTGGTTTAA___TTTAAACAGGTTTGTTCTACTTAGTCTAGAACAACAGTTCTCCTGGAGCTTCTGTATGGTACAATTTGTGCTGGGAGCTGTTACAAATCCTTGTAGTTTTTGTAAGTTGGACATTGTACTTAATACAATTGCCTACTATTGAATATGATACAAGGGATTGGGGC

Fln Alignment:

sp_v1.1_unigene17121___MGSVNGMNGWWLFMALLGICSAMSSVRSMAEEVPAMQLIYHNGPLLSSDIDVHVVWYGKFSPVQRSITGDFLHSLGEEEEETLLRNQPSVKEWWKTTDVYREDALFSMSFAVATEKKKNEKIVLVNQTLDESYSLGKWLQRTHIEALVLRASVASNTLVPEKGIFLVLTAQDVVVERFCTSSCGFHSSVKGGKGRRSVSLPYAWVGNSVTQCPGQCAWPFHQPLYGPQTIPLVAPNGDVGVDGMIINIATVLVGTVTNPFNTGFFQGDAALPLEGVSACRGMYGRGAYPGYAGQLLVDETTGASFNARGLNGRMFLLPVMWDPLTKSCKTLV
A9P1J7_______________MGAASGMNGWWLFMAALGFCSGILSSMVMAEEAPAVQLIYHKGSLLSSDIDVHVVWYGKFSPTQRSIIVDFLESLGENEEEALLRNQPSVQEWWKTTGLYGEDASFNMSSAVSSKKKK--KTVLGSQTLDESYSLGKWLQRTHIEALVLRASVASNALLPEKGVFLVLTAQDVVVERFCMSSCGFHSSARSGKGRNSVSLPYAWVGNSVTQCPGQCAWPFHQPLYGPQIPPLVAPNGDVGVDGMIINIATVLVGTVTNPFNTGFFQGDAAAPLEGVSACGGMYGRGAYPGYAGQLLGDETTGASFNARGLNGRMFLLPAMWDPLTKSCKTLV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
147	25		75		0.996473
150			25	75	0.996473
225	75		25		0.996473
314		12		87	0.992554
843		47	52		1.0
998		90		10	0.90298
1003		44		55	1.0
1029		25		75	1.0
1037			14	85	0.993533
1048	33		66		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
546	558	AGA AGA AGA AGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain