SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17118

Length: 850 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17118

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SSI9_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	gdsl-motif lipase hydrolase family protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0U2

Fln msg: Distance to subject end: 99 aas, your sequence is shorter than subject: 263 - 359

Fln protein: MALELLAKSFNLFIPCSIILVFFIFYGEASEIASPPKVSALFVFGDSTVDAGNNDYIVTPTKGDHVPYGRDFTDHKPTGRFSNGKLATDFLSAALGLKETLPAYLDPALTSQDLITGVCFASAGSGFDNATAEGSAALTLWKQVQYFKSYKTALEKVVGHENASAIITNALFVCGTGVNDFLPNRRPLMRLDSYQDFLLQVVDNFIQVLYSEGARRIAFMALPPMGCVPLVRTLALKQSPGKTVDEHGCLEDENQVAIDFNAK

Protein Length: 264

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCTCTAACGCCATTGCTACTCTATAACAGTACA_-_ATGGCGTTGGAGTTGCTTGCTAAATCCTTCAACCTGTTCATCCCCTGCTCAATAATTCTCGTATTCTTCATTTTCTATGGCGAAGCGTCCGAAATAGCAAGCCCGCCAAAGGTGTCCGCTCTGTTTGTATTTGGGGACTCGACCGTGGATGCAGGCAACAACGACTATATTGTAACCCCAACAAAGGGCGACCATGTTCCTTACGGGCGGGATTTTACCGACCATAAACCCACCGGAAGGTTTTCTAATGGCAAATTAGCAACGGATTTTCTCTCTGCAGCATTGGGACTGAAGGAGACATTGCCAGCATATTTAGACCCTGCGCTGACTTCCCAAGACCTAATCACGGGTGTATGCTTTGCTTCAGCGGGATCTGGCTTTGATAATGCCACCGCCGAGGGATCTGCTGCGTTGACTTTATGGAAGCAGGTGCAGTACTTCAAGAGTTACAAAACGGCATTGGAAAAAGTCGTTGGACATGAAAACGCGTCAGCCATCATAACCAACGCGTTGTTTGTGTGTGGCACAGGCGTTAACGACTTTCTGCCAAATCGAAGGCCACTTATGAGGTTGGACAGTTACCAGGATTTTCTGCTGCAAGTAGTCGACAATTTCATTCAGGTGCTATACAGCGAGGGTGCACGCAGGATTGCGTTCATGGCACTCCCTCCAATGGGTTGCGTACCCTTAGTGAGAACTTTAGCTTTGAAGCAATCCCCAGGCAAAACGGTGGATGAACATGGATGCTTAGAAGATGAGAACCAGGTGGCGATTGACTTCAACGCAAAGTT

Fln Alignment:

sp_v1.1_unigene17118___SIILVFFIFYGEA-SEIASPPK--VSALFVFGDSTVDAGNNDYIVTPTKGDHVPYGRDFTDHKPTGRFSNGKLATDFLSAALGLKETLPAYLDPALTSQDLITGVCFASAGSGFDNATAEGSAALTLWKQVQYFKSYKTALEKVVGHENASAIITNALFVCGTGVNDFLPNR--RPLMRLD----SYQDFLLQVVDNFIQVLYSEGARRIAFMALPPMGCVPLVRTL--ALKQSPGKTVDEHGCLEDENQVAIDFNAK
A9P0U2_______________ALIFLLFMFSGTSWAKIQRPAKRLAPALIVFGDSTVDPGNNNNISTVLKANFLPYGRDFTGHRPTGRFSNGRLTTDFLAEGLGIKETVPAYLDPGLTPEDLLTGVSFASAGTGYDNRTAKAFSVIPIWKEVEYFKEYGQKLGKISGAENATRILNEAIVIVSMGSNDFLVNYYVNPYTRIQYNVAQFQDHLLQIGSNFLQEIYNYGARRILITGIPPLGCLPIERTVRNIYKQ-------EQGCLEDLNQHAISYNIK

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
156			65	34	1.0
158	65		34		1.0
163		65		34	1.0
188	61	3	34		1.0
203		61	38		1.0
206		38	61		1.0
211	57	42			1.0
238		58		41	1.0
260		44		55	1.0
277		58		41	1.0
286	59		40		1.0
315		26		73	1.0
393		37	56		1.0
402	53		46		1.0
405	53			46	1.0
413	90			10	0.90298
414		10		90	0.90298
417	11			88	0.923564
418			11	88	0.923564
421	11	88			0.923564
422			11	88	0.923564
424		87	12		0.992554
426		12	87		0.992554
427	12	87			0.992554
430		12	87		0.992554
431	87	12			0.992554
432	12			87	0.992554
439			14	85	0.993533
440		14		85	0.993533
448		33		66	1.0
460	50		25		0.995533
474	25	75			0.996473
500		33		66	0.997452
746	40	60			1.0
758		60		40	1.0
776	25	75			0.996473
780	25		75		0.996473
800		25		75	0.996473
808		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain