SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17117

Length: 3502 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17117
CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAGGTAGCGAGGGTTTGTACGAGCAATAAACGTGCTGTGTGGGAGAAGGTGGTTTCGCTGGAGGCAAGTAAGGAAGGAAGGAGGAGGGGCTTTGCAGGAGCAAAAATCCGGGAGGGTTTTGTTTTCTTCGGCACAAGATATTTTTAGCCTTTGGTCCTGCAGGTTCTGATTCTTGACCTTGCTTCTCCGCACTTTCTGTAATACATTGTTTTGGTTTTTTTCTTGCGTTGGGGTTGTGCATATTTTCGGCCTCGTCTCGTTAGGGTTTGGAAAAACAGCTGGTAGATTTTTTTCTTAAATTTCGTGGCCTTGTCTCGGTTAGGGGTTTCGGGTATGTGTCCGGAATTGAATTTGGAGTTGAGTTTTTTTTCACGGGGGTCTCTTTCATGGGGGTCTCAGGGCTGAATGACAGCTGGGCATCGGCTTGTTCAGTCCTGAAATGGTGATGGATGCAAAGCTGAAATATATTCCGTCGTGGATAACGAAGTTGTAAATAAATAACGAATGTTACAGAACCTGTGGGTTTAATTCATGATAGAAATGGAGAACAAAGGGGAGTGTTTCTCCAAGCTTGCCAGAAGCATTGTGCATAGAGTTCGAATGAAGAGAAAAGGGGCTTATAAACATATTGATACATACCGTAGTGGCTTAACCTTGGGTAAGGGGGCTTTTAAATTGGGTAAGGGGACTGGTGGTGTTCCTAATTCTGGAAATAGAGCACGTAAAGCTGCAGGGAATGTGAAAACCTGTGATGGGTGTCGCTGTTCCGACAATACAATTCTGCACAATTATGGGAATTACCGAAAGAGTGCGGTTCCTGAGAGGCTTATGTATTATTGGAATGACGGGTGGAATGATTTTTCAGCCGAAGCTTCGGATTCGTTAAGGAAGGCATTCTCAAGTGGCATGCCCACTACAGAGGTGGTGATAGATGGATCGCGTTACCTCGTCGATTTTTTGCGGATGCTGCAAATAGATTTGAGGGTGGGTTGCCAAAGGTCCATTGGCTGGATTGACAAGAATGGCTCTTGCTTTTTCCCCAAAGGCTTCTTTGAGGACAATATTGATGATGCCGACGTTGCCCCGAAAGTCGAAGTTGAGATCGAGATTCGAATAGGCGCAACTGAGGGCTCGAAGGCTTCTCCGGGCTCGAAGGCTGAGAAGCGTGGACTTGAGGATAACTTGGAGCCCTTGTCCGAGGGTTCGGAGACTGACAAGGATGTGCACCCCAATAATTTTGATCCCTCATTCGCCCTCGCAAAAACTGAGAAATGCGAATGTAGTAGTAACTCTGAACACTTGAATGTTACCGAATCTGATAACAAAAGTCGAGTAGCTACAGATGCCTTTAAAGCATACAAATTGATCAGGAAAGCGGCAGCTGTGGTCCCTGCACCTACAAATGATATTGAGCGAAGCTCGAGTCACAGAGGTAATGAGACCGCTGCGTTGTCCCCAAAACCATCCAAAGATTCAAAAGATGAGGAGGCTACCGGTGGTGCTGTCAATAGCTCCCAATGGTCAGATTCCAAACAGTCTTCAAGTTTGGAAGCTTCTGAATTTGAATCGTTGGGTGACAGATTGCTCAAATTGGAAGATGGAAATGAAGAGTATGTCGCTGTGCAGAGCCGTTTTCTATCCGGTTCGAGTAAAATTGCAGTTGGAATCACTGTTACGGGTATTTATCGAAATACCCATACTAGTGCAATGGGGCAGGCTCGACTGCAGGCTTTTCACAGGCGGGTTGAGTTCACTAGAATGTCCCGTGGTAACGCAAATGTTAGAAGTGCCTGGCACGGAACATCTAGCAAATGTGCCGCAGCAATCATACTTCATGGTTTTAGCCACAGTAGAACACATAATAATGGTCCATCGTACGGTGTTGGTGTTTATCTTGCTCCAGAAGATCGCTCCTACCTCAGTGCTTCATTTTCGGATATTGACAAAAATGGTGAACAGCACATGGTGCTGTGCCGGGTTATTCTTGGAAATGTTGAGAAAGTACCGCTTGGCTCTCAACAGTTCCATCCTACTTGTGAAAAGTTTGATTCCGGTGTTGATGATCTCACTAATCCGAAGTGTTACATCATTTGGAGCACTCACATGAACATGCACATTCTTCCAGAGTACATTGTGAGCTTTAAGGTTCCCCCTCAAATGCATGAATGCTGGGCTGAATCGAAAGCAAAGCAAGGCATTTGTGGTGTACCCAAAAGTTTCAGCAGCTCTCTGGAGGATGTTGAAGTTGCTCGCCAGGGTTCTGTTTATGACATGCACCCTTCTTTGGCTTCAGTTGAAGGAAGAAAATGCAAGATGCAGGAACCTGCAAAAGGATCAATGCGAATTCCTAGTGCTGCCAGCATGTCGTTTCCGAGGTTGTTCTCGGTCATAAGAAAGTCTCTGCCACCTGCTTATATGAATACATTGGAACACCTCTATGCTCAGTACAAGGTAGGAAAAATCGGCAAAGAAACCATCATAAGAAATGTCAGAATGATTGTTGGAGATAAGTTGCTGATTGCAGCTATCCAAAGCATTCGAGGCCAGACTAAATGTACACAAATGCTAAACAAAGTGGAGCATGATCCACATTCAATCCTGTATTCTGACAGGCTAAATCTAGATAATGAGTCTACTACATCCACAAATAAGAAAGATCATATGGAGGTGTCTAATGGAGTAGATAGTGTTCCCCATTCTTTGCTGGCATCCAAGAAACTACACACGGACAATAAATGCATTTCATCGATGAATCAGACCCTTGCAATTAGGCGACAATCACAAATAAATGGTCAGAGCTCTAGCAGGCCAGAGTCCGGTCATGACCAGAATTCAATTCATTTTGAGAAGGAAAATTCTTCTCCAAGCACTGGGGCAGTATAGACAGTGGATTTCAAGATTAATGAATAAAGGTTCACACGTGGTTTCAAATGCATCAGTTTTCAAGAATAGATTCTTGGCATGCTTGATAGATTGGAGCCATGTAGTTTTCCTCTGGTTGCAATCAAGCGATTTTCGATCTTGAGTAGTAATGTGATTAACATGTTTATTTCTTGTCCCAGCAAATGGTCGTCTGCATATGTGCATATGTGCCTACTTAAGACGTCTAAGGAAATTTATAAACTAATTATTTCTTCGCTCTTTTTGATTGAAGAGTCTAAATGTAACATGTTTCTCTCTTCTCAAGGAAAAATGTGCGTACTTATGCAACTTAAGGAAATTTATGAAAACTCTGAAATCTAATGAAAGTTATCTCTACACTGCATAACAGACTAATGCTGATAAGTGTTGATTTTCATGTCTGCTTGAAGGATTATTAGAAAGTGCTGTTATTCGATTAAGTTAATAACTGCTTTCTATTGTTTTGGAAAGATATTTGGCCTTGATTAGTGGTGGAAAACTGTACTGCTTTCTATTGTTTTGGAAAGATGCATCTTATTTGGCCTTGATTAGTGGT

Ace file of the UniGene sp_v1.1_unigene17117

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RST multi-domain protein	-	-	4.0e-12	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	56%

Source	InterPros	Term	Type	Identity
Blast2go	WWE domain	IPR004170	-	56%
Blast2go	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	56%
Blast2go	RST domain of plant C-terminal	IPR022003	-	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZW2

Fln msg: your sequence is longer than subject: 784 - 259

Fln protein: MIEMENKGECFSKLARSIVHRVRMKRKGAYKHIDTYRSGLTLGKGAFKLGKGTGGVPNSGNRARKAAGNVKTCDGCRCSDNTILHNYGNYRKSAVPERLMYYWNDGWNDFSAEASDSLRKAFSSGMPTTEVVIDGSRYLVDFLRMLQIDLRVGCQRSIGWIDKNGSCFFPKGFFEDNIDDADVAPKVEVEIEIRIGATEGSKASPGSKAEKRGLEDNLEPLSEGSETDKDVHPNNFDPSFALAKTEKCECSSNSEHLNVTESDNKSRVATDAFKAYKLIRKAAAVVPAPTNDIERSSSHRGNETAALSPKPSKDSKDEEATGGAVNSSQWSDSKQSSSLEASEFESLGDRLLKLEDGNEEYVAVQSRFLSGSSKIAVGITVTGIYRNTHTSAMGQARLQAFHRRVEFTRMSRGNANVRSAWHGTSSKCAAAIILHGFSHSRTHNNGPSYGVGVYLAPEDRSYLSASFSDIDKNGEQHMVLCRVILGNVEKVPLGSQQFHPTCEKFDSGVDDLTNPKCYIIWSTHMNMHILPEYIVSFKVPPQMHECWAESKAKQGICGVPKSFSSSLEDVEVARQGSVYDMHPSLASVEGRKCKMQEPAKGSMRIPSAASMSFPRLFSVIRKSLPPAYMNTLEHLYAQYKVGKIGKETIIRNVRMIVGDKLLIAAIQSIRGQTKCTQMLNKVEHDPHSILYSDRLNLDNESTTSTNKKDHMEVSNGVDSVPHSLLASKKLHTDNKCISSMNQTLAIRRQSQINGQSSSRPESGHDQNSIHFEKENSSPSTGAV*

Protein Length: 785

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAGGTAGCGAGGGTTTGTACGAGCAATAAACGTGCTGTGTGGGAGAAGGTGGTTTCGCTGGAGGCAAGTAAGGAAGGAAGGAGGAGGGGCTTTGCAGGAGCAAAAATCCGGGAGGGTTTTGTTTTCTTCGGCACAAGATATTTTTAGCCTTTGGTCCTGCAGGTTCTGATTCTTGACCTTGCTTCTCCGCACTTTCTGTAATACATTGTTTTGGTTTTTTTCTTGCGTTGGGGTTGTGCATATTTTCGGCCTCGTCTCGTTAGGGTTTGGAAAAACAGCTGGTAGATTTTTTTCTTAAATTTCGTGGCCTTGTCTCGGTTAGGGGTTTCGGGTATGTGTCCGGAATTGAATTTGGAGTTGAGTTTTTTTTCACGGGGGTCTCTTTCATGGGGGTCTCAGGGCTGAATGACAGCTGGGCATCGGCTTGTTCAGTCCTGAAATGGTGATGGATGCAAAGCTGAAATATATTCCGTCGTGGATAACGAAGTTGTAAATAAATAACGAATGTTACAGAACCTGTGGGTTTAATTC_-_ATGATAGAAATGGAGAACAAAGGGGAGTGTTTCTCCAAGCTTGCCAGAAGCATTGTGCATAGAGTTCGAATGAAGAGAAAAGGGGCTTATAAACATATTGATACATACCGTAGTGGCTTAACCTTGGGTAAGGGGGCTTTTAAATTGGGTAAGGGGACTGGTGGTGTTCCTAATTCTGGAAATAGAGCACGTAAAGCTGCAGGGAATGTGAAAACCTGTGATGGGTGTCGCTGTTCCGACAATACAATTCTGCACAATTATGGGAATTACCGAAAGAGTGCGGTTCCTGAGAGGCTTATGTATTATTGGAATGACGGGTGGAATGATTTTTCAGCCGAAGCTTCGGATTCGTTAAGGAAGGCATTCTCAAGTGGCATGCCCACTACAGAGGTGGTGATAGATGGATCGCGTTACCTCGTCGATTTTTTGCGGATGCTGCAAATAGATTTGAGGGTGGGTTGCCAAAGGTCCATTGGCTGGATTGACAAGAATGGCTCTTGCTTTTTCCCCAAAGGCTTCTTTGAGGACAATATTGATGATGCCGACGTTGCCCCGAAAGTCGAAGTTGAGATCGAGATTCGAATAGGCGCAACTGAGGGCTCGAAGGCTTCTCCGGGCTCGAAGGCTGAGAAGCGTGGACTTGAGGATAACTTGGAGCCCTTGTCCGAGGGTTCGGAGACTGACAAGGATGTGCACCCCAATAATTTTGATCCCTCATTCGCCCTCGCAAAAACTGAGAAATGCGAATGTAGTAGTAACTCTGAACACTTGAATGTTACCGAATCTGATAACAAAAGTCGAGTAGCTACAGATGCCTTTAAAGCATACAAATTGATCAGGAAAGCGGCAGCTGTGGTCCCTGCACCTACAAATGATATTGAGCGAAGCTCGAGTCACAGAGGTAATGAGACCGCTGCGTTGTCCCCAAAACCATCCAAAGATTCAAAAGATGAGGAGGCTACCGGTGGTGCTGTCAATAGCTCCCAATGGTCAGATTCCAAACAGTCTTCAAGTTTGGAAGCTTCTGAATTTGAATCGTTGGGTGACAGATTGCTCAAATTGGAAGATGGAAATGAAGAGTATGTCGCTGTGCAGAGCCGTTTTCTATCCGGTTCGAGTAAAATTGCAGTTGGAATCACTGTTACGGGTATTTATCGAAATACCCATACTAGTGCAATGGGGCAGGCTCGACTGCAGGCTTTTCACAGGCGGGTTGAGTTCACTAGAATGTCCCGTGGTAACGCAAATGTTAGAAGTGCCTGGCACGGAACATCTAGCAAATGTGCCGCAGCAATCATACTTCATGGTTTTAGCCACAGTAGAACACATAATAATGGTCCATCGTACGGTGTTGGTGTTTATCTTGCTCCAGAAGATCGCTCCTACCTCAGTGCTTCATTTTCGGATATTGACAAAAATGGTGAACAGCACATGGTGCTGTGCCGGGTTATTCTTGGAAATGTTGAGAAAGTACCGCTTGGCTCTCAACAGTTCCATCCTACTTGTGAAAAGTTTGATTCCGGTGTTGATGATCTCACTAATCCGAAGTGTTACATCATTTGGAGCACTCACATGAACATGCACATTCTTCCAGAGTACATTGTGAGCTTTAAGGTTCCCCCTCAAATGCATGAATGCTGGGCTGAATCGAAAGCAAAGCAAGGCATTTGTGGTGTACCCAAAAGTTTCAGCAGCTCTCTGGAGGATGTTGAAGTTGCTCGCCAGGGTTCTGTTTATGACATGCACCCTTCTTTGGCTTCAGTTGAAGGAAGAAAATGCAAGATGCAGGAACCTGCAAAAGGATCAATGCGAATTCCTAGTGCTGCCAGCATGTCGTTTCCGAGGTTGTTCTCGGTCATAAGAAAGTCTCTGCCACCTGCTTATATGAATACATTGGAACACCTCTATGCTCAGTACAAGGTAGGAAAAATCGGCAAAGAAACCATCATAAGAAATGTCAGAATGATTGTTGGAGATAAGTTGCTGATTGCAGCTATCCAAAGCATTCGAGGCCAGACTAAATGTACACAAATGCTAAACAAAGTGGAGCATGATCCACATTCAATCCTGTATTCTGACAGGCTAAATCTAGATAATGAGTCTACTACATCCACAAATAAGAAAGATCATATGGAGGTGTCTAATGGAGTAGATAGTGTTCCCCATTCTTTGCTGGCATCCAAGAAACTACACACGGACAATAAATGCATTTCATCGATGAATCAGACCCTTGCAATTAGGCGACAATCACAAATAAATGGTCAGAGCTCTAGCAGGCCAGAGTCCGGTCATGACCAGAATTCAATTCATTTTGAGAAGGAAAATTCTTCTCCAAGCACTGGGGCAGTATAG___ACAGTGGATTTCAAGATTAATGAATAAAGGTTCACACGTGGTTTCAAATGCATCAGTTTTCAAGAATAGATTCTTGGCATGCTTGATAGATTGGAGCCATGTAGTTTTCCTCTGGTTGCAATCAAGCGATTTTCGATCTTGAGTAGTAATGTGATTAACATGTTTATTTCTTGTCCCAGCAAATGGTCGTCTGCATATGTGCATATGTGCCTACTTAAGACGTCTAAGGAAATTTATAAACTAATTATTTCTTCGCTCTTTTTGATTGAAGAGTCTAAATGTAACATGTTTCTCTCTTCTCAAGGAAAAATGTGCGTACTTATGCAACTTAAGGAAATTTATGAAAACTCTGAAATCTAATGAAAGTTATCTCTACACTGCATAACAGACTAATGCTGATAAGTGTTGATTTTCATGTCTGCTTGAAGGATTATTAGAAAGTGCTGTTATTCGATTAAGTTAATAACTGCTTTCTATTGTTTTGGAAAGATATTTGGCCTTGATTAGTGGTGGAAAACTGTACTGCTTTCTATTGTTTTGGAAAGATGCATCTTATTTGGCCTTGATTAGTGGT

Fln Alignment:

sp_v1.1_unigene17117___MNMHILPEYIVSFKVPPQMHECWAESKAKQGICGVPKSFSSSLEDVEVARQGSVYDMHPSLASVEGRKCKMQEPAKGSMRIPSAASMSFPRLFSVIRKSLPPAYMNTLEHLYAQYKVGKIGKETIIRNVRMIVGDKLLIAAIQSIRGQTKCTQMLNKVEHDPHSILYSDRLNLDNESTTSTNKKDHMEVSNGVDSVPHSLLASKKLHTDNKCISSMNQTLAIRRQSQINGQSSSRPESGHDQNSIHFEKENSSPSTGAV
A9NZW2_______________MNMHILPEYIVSFKVSHQMHDCWAELKAKQGICGVPKSFGSSLDDVEVAHQGSVYDMHPSSASVEGRKCKVQASSKGSTQIPCAASMSFPKLFSVIRKSLPTAYMNTLEHLYAQYKAGKIGKDIIIRKVRMIVGDKLLIAAIQSIRGQTKCTQMLNRVEHGPHSFLGSDRLNLDNESTASTNKKDHMEVVNGVDNVPHSLLASRKLHMDNKCNSSMNQTLATRRQSQISGHSSSRSESGHDQNSIHCEKENSSPSTGVV

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
265		11		88	0.923564
266			11	88	0.923564
268			11	88	0.923564
269	11			88	0.923564
270		11		88	0.923564
278		11		88	0.923564
279			87	12	0.992554
280		12	87		0.992554
281	12		87		0.992554
422		60		40	1.0
616	33	66			0.997452
1162	85		14		0.993533
1246	12	87			0.992554
1247			87	12	0.992554
1248	87		12		0.992554
1308	10	90			0.90298
1705	14			85	0.993533
1732		83		16	0.994512
1871	20		80		0.999996
3221		16		83	1.0
3298			40	60	1.0
3307	88			11	0.923564
3319	80			20	0.995493
3333	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
115	127	AAGG AAGG AAGG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain