SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17110

Length: 2480 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17110
TTTTTGATGTAATGTTTTTCTGATATTTATAGCAGGGGAGTGAATAGAAACGGGTTCAGGGACGAGGGTAGGGAAAGATTATGGTTGAAGAAATTGGGGGTTTGATAGATTTGGATTGAGTATATTTGGAATTCGGAGATCTCTGTCTGTGTGTCTGAGTTTGTCGGGTCTCTGTTATTGCTTGTCTCGTTGATTGATTTAGCAAAAATGTCAAGCGTTTCTGCAGAACAACCAGCGTATTCCATGGGGCCGTTGCCCTGGTCGTTTTTCAGTGATCATTCTTCTGGTAGCCATGGCGACGATTCGGTTTGTTTCATGTCCCCTGGTCGCAGTGGCGGGTTGAATTTGAATGAGGTTCAGTATTCTTCTTCGTCGCCGACTTCTTCAGATTACCTGAATTCTCCGCCTTCAAGATTCGCAGCAAGTCGCGGGTTCGAAGACGACAGAAGTGCTCTGAGCTTTCCGGATTTTCCAGACATGAGCTGTGGCTATGAGAGCAATGGAGATGCCGCGGCTTTTGTGCAGAAAGATGCACGAGGCGAGATGCCAGGCATTCGTTTTAATAACGCATTTGTGGGCTCTAGTTCGCCTCGGCTGGAGGATGTGTTTTGTGCCCTGCAGAAGTATTTGCCTTCTAATAATGAAGATGAAGAGTCTTTGCCTGCTGTGGATGCTTATTCCTGCGACGAATTCAGAATGTATGAATTTAAGGTCCGGCGCTGTATGAGAGGACGGAGCCATGACTGGACTGAGTGCCCCTTCGCTCACCCAGGGGAGAAGGCAAGAAGACGCGATCCTCGACGCTTTCATTATTCTGGAACTGCTTGCCCGGACTTCAGAAAAGGAACCTGCCGCCGCGGGGATGCTTGCGAGTTTGCCCACGGCGTTTTCGAGTGCTGGCTTCATCCTGCTCGATATCGGACCCAGCCTTGTAAAGATGGACGGAGCTGTAAGCGCAGAGTCTGTTTCTTTGCTCATACTCCGCAGCAACTCCGCCTGTTGCCAGGGCTTTCATCTCCCAGCAGCAATTCAAGAAGCAGTACGGCGCTGCATGTTGCTTCTGCTCTGAAGAACTATTCTCTGTCGGCCTCAGCAGCAGCTTATGACGGATCACCGCTTCGGCAGGCGCTTGAAGGAATCGTGAGTTCGAGTTCCCCCGGCGGATCTTTGATATCTTCCCCGACTTCGACGTTGGTGGGTTCCCAGTCACCTCCGCCTCTGTCTCCACCACTGTCACCATCTGCGTCCTCCCCTCTGTCGCCTGAGCCTGGATGGTCTAATACTTACAGAGTCGGTTTTCAAAAGGCTGTTCTTAACAGACAAATCCCTGGACACCGTCGTCATGTAGAGAGAATTGCCTCAATGCCTTCTGAAGCCTCAAGAGGGTTGGCAAGCCCAAGGCTTATGAATTTATCTGATAGTACTTCCCAACAGCAGCCAATGGTGGAACTTATTAATTCACTCCAGAGTTTGAGGATGAAGGAATCCTCTGTACCTTCATGGCTGCAAGTTCAACCCCAAATGGTCAATGGTGGCGGTGGGCATGGATCTCCGAGGGTTTCGAACCTGCGACATTGTGTCGTTCAAAGCCTCCCCTGCACACCAACTCACTCGGAAACCGCCGATGATGTGGGTGATTGGTTTGAAGAGCCTGTTCAGAGGGTCGAATCTGGTAAAGACTTGAGGGCAAAGATATACGCAAGGCTTACAAGAGAAAATCTCAATCAGGACTCTTCTTTATCAGCAGAGTCGCCAGATGTCGGTTGGGTGAACGAGCTTGTCAAGTAATGGATTCAGGGTTTTAGGTTTTTTCTTCATTCGCAGGTATTGATCCTTTGATGAATTCGTAATTTTATTTTGATTGTTTTTAATATTTGTAGAAGTTGGGGACTTCAGTGGTTTTTACTCGGAGCCATGAGAATAGTGTTGCATGGCCGAGTTCGCCATGGGGAAAAGAATTACTAAACCTGGGGAATGTACAGATGAAGATGGGTTGACCTAATCATAAATTTACAAGTTGATGTCTGCTTAGCTGCAGTGCAAAGTGACTTGAGTTTTTACAAGGGCAATGATGTCGGACCTCTCTATTTTGCCCTGGCCAACAAGTTGCACATATATTTTGGCAGATGGTATGTCGCTGACTGGGCAGAGCCTGCCTTCTGTTAATTTTTTGGGGATGTAGCTTAACATCCTATGATGCTGTGATATATAACAATATTAATAATCGATCGATCGTCATATTAGCCATAGTAGTGAATACTTCCATTGTATGGGTGGATTAAGAACGCATCCATCCATTTTGGTACATTATTTTGTTACATAGAATAGTTTTCTGTACAGGAAGCATAGCACATAGGGCAGTCGAGTCAGGTGAGGTGACTGCTTGTTACAGACCAGCAGTGCCTGCCATTGTGTAAAAACAATTATCATTTTCCATTCATTTGAATTTTAATGCCATTAATGTGATTATATATTTCAAT

Ace file of the UniGene sp_v1.1_unigene17110

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	76%
Blast2go	Starch and sucrose metabolism	00500	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	76%
Blast2go	cell wall modification	GO:0042545	Biological Process	76%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	76%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	76%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	76%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%
Blast2go	cell wall	GO:0005618	Cellular Component	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMK4

Fln msg: your sequence is shorter than subject: 527 - 581

Fln protein: MSSVSAEQPAYSMGPLPWSFFSDHSSGSHGDDSVCFMSPGRSGGLNLNEVQYSSSSPTSSDYLNSPPSRFAASRGFEDDRSALSFPDFPDMSCGYESNGDAAAFVQKDARGEMPGIRFNNAFVGSSSPRLEDVFCALQKYLPSNNEDEESLPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTACPDFRKGTCRRGDACEFAHGVFECWLHPARYRTQPCKDGRSCKRRVCFFAHTPQQLRLLPGLSSPSSNSRSSTALHVASALKNYSLSASAAAYDGSPLRQALEGIVSSSSPGGSLISSPTSTLVGSQSPPPLSPPLSPSASSPLSPEPGWSNTYRVGFQKAVLNRQIPGHRRHVERIASMPSEASRGLASPRLMNLSDSTSQQQPMVELINSLQSLRMKESSVPSWLQVQPQMVNGGGGHGSPRVSNLRHCVVQSLPCTPTHSETADDVGDWFEEPVQRVESGKDLRAKIYARLTRENLNQDSSLSAESPDVGWVNELVK*

Protein Length: 528

Fln nts: TTTTTGATGTAATGTTTTTCTGATATTTATAGCAGGGGAGTGAATAGAAACGGGTTCAGGGACGAGGGTAGGGAAAGATTATGGTTGAAGAAATTGGGGGTTTGATAGATTTGGATTGAGTATATTTGGAATTCGGAGATCTCTGTCTGTGTGTCTGAGTTTGTCGGGTCTCTGTTATTGCTTGTCTCGTTGATTGATTTAGCAAAA_-_ATGTCAAGCGTTTCTGCAGAACAACCAGCGTATTCCATGGGGCCGTTGCCCTGGTCGTTTTTCAGTGATCATTCTTCTGGTAGCCATGGCGACGATTCGGTTTGTTTCATGTCCCCTGGTCGCAGTGGCGGGTTGAATTTGAATGAGGTTCAGTATTCTTCTTCGTCGCCGACTTCTTCAGATTACCTGAATTCTCCGCCTTCAAGATTCGCAGCAAGTCGCGGGTTCGAAGACGACAGAAGTGCTCTGAGCTTTCCGGATTTTCCAGACATGAGCTGTGGCTATGAGAGCAATGGAGATGCCGCGGCTTTTGTGCAGAAAGATGCACGAGGCGAGATGCCAGGCATTCGTTTTAATAACGCATTTGTGGGCTCTAGTTCGCCTCGGCTGGAGGATGTGTTTTGTGCCCTGCAGAAGTATTTGCCTTCTAATAATGAAGATGAAGAGTCTTTGCCTGCTGTGGATGCTTATTCCTGCGACGAATTCAGAATGTATGAATTTAAGGTCCGGCGCTGTATGAGAGGACGGAGCCATGACTGGACTGAGTGCCCCTTCGCTCACCCAGGGGAGAAGGCAAGAAGACGCGATCCTCGACGCTTTCATTATTCTGGAACTGCTTGCCCGGACTTCAGAAAAGGAACCTGCCGCCGCGGGGATGCTTGCGAGTTTGCCCACGGCGTTTTCGAGTGCTGGCTTCATCCTGCTCGATATCGGACCCAGCCTTGTAAAGATGGACGGAGCTGTAAGCGCAGAGTCTGTTTCTTTGCTCATACTCCGCAGCAACTCCGCCTGTTGCCAGGGCTTTCATCTCCCAGCAGCAATTCAAGAAGCAGTACGGCGCTGCATGTTGCTTCTGCTCTGAAGAACTATTCTCTGTCGGCCTCAGCAGCAGCTTATGACGGATCACCGCTTCGGCAGGCGCTTGAAGGAATCGTGAGTTCGAGTTCCCCCGGCGGATCTTTGATATCTTCCCCGACTTCGACGTTGGTGGGTTCCCAGTCACCTCCGCCTCTGTCTCCACCACTGTCACCATCTGCGTCCTCCCCTCTGTCGCCTGAGCCTGGATGGTCTAATACTTACAGAGTCGGTTTTCAAAAGGCTGTTCTTAACAGACAAATCCCTGGACACCGTCGTCATGTAGAGAGAATTGCCTCAATGCCTTCTGAAGCCTCAAGAGGGTTGGCAAGCCCAAGGCTTATGAATTTATCTGATAGTACTTCCCAACAGCAGCCAATGGTGGAACTTATTAATTCACTCCAGAGTTTGAGGATGAAGGAATCCTCTGTACCTTCATGGCTGCAAGTTCAACCCCAAATGGTCAATGGTGGCGGTGGGCATGGATCTCCGAGGGTTTCGAACCTGCGACATTGTGTCGTTCAAAGCCTCCCCTGCACACCAACTCACTCGGAAACCGCCGATGATGTGGGTGATTGGTTTGAAGAGCCTGTTCAGAGGGTCGAATCTGGTAAAGACTTGAGGGCAAAGATATACGCAAGGCTTACAAGAGAAAATCTCAATCAGGACTCTTCTTTATCAGCAGAGTCGCCAGATGTCGGTTGGGTGAACGAGCTTGTCAAGTAA___TGGATTCAGGGTTTTAGGTTTTTTCTTCATTCGCAGGTATTGATCCTTTGATGAATTCGTAATTTTATTTTGATTGTTTTTAATATTTGTAGAAGTTGGGGACTTCAGTGGTTTTTACTCGGAGCCATGAGAATAGTGTTGCATGGCCGAGTTCGCCATGGGGAAAAGAATTACTAAACCTGGGGAATGTACAGATGAAGATGGGTTGACCTAATCATAAATTTACAAGTTGATGTCTGCTTAGCTGCAGTGCAAAGTGACTTGAGTTTTTACAAGGGCAATGATGTCGGACCTCTCTATTTTGCCCTGGCCAACAAGTTGCACATATATTTTGGCAGATGGTATGTCGCTGACTGGGCAGAGCCTGCCTTCTGTTAATTTTTTGGGGATGTAGCTTAACATCCTATGATGCTGTGATATATAACAATATTAATAATCGATCGATCGTCATATTAGCCATAGTAGTGAATACTTCCATTGTATGGGTGGATTAAGAACGCATCCATCCATTTTGGTACATTATTTTGTTACATAGAATAGTTTTCTGTACAGGAAGCATAGCACATAGGGCAGTCGAGTCAGGTGAGGTGACTGCTTGTTACAGACCAGCAGTGCCTGCCATTGTGTAAAAACAATTATCATTTTCCATTCATTTGAATTTTAATGCCATTAATGTGATTATATATTTCAAT

Fln Alignment:

sp_v1.1_unigene17110___ALQKYLPSNNEDEESLPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTACPDFRKGTCRRGDACEFAHGVFECWLHPARYRTQPCKDGRSCKRRVCFFAHTPQQXXXXXXXXXXXXXXXXXTALHVASALK---NYSLSASAAAYDG---SPL--------------------RQALEGIVXXXXXXXXXXXXXXXXXVGXXXXXXXXXXXXXXXXXXXXXEPGWSNTYRVGFQKAVLNRQIPGHRRHVERI--------ASMPSEASRGLASPR-------------------LMNLSDSTSQQQP---MVELINSLQSLRM-----KESSVPS----WLQVQPQMVNGGGGHGSPRVSNLRHCVVQSLPCTPTHSETADD-VGDWF--EEPVQRVESGKDLRAKIYARLTRENLNQDSSLSAESPDVGWVNELVK
B8LMK4_______________ALHKYLPSNNEDEASWPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTACPDFRKGSCRRGDACEFAHGVFECWLHPARYRTQPCKDGRNCRRRVCFFAHTPEQ-LRLLPGASVGSRNGFQSKNHEGSNLRHAVSFDGALAVAAYDGGGSSPVNHFGNGGGYFDGSQTGGSSPRGYLCGKSNLSCTSQFQMSSPTSTLVGHAHSPPPLSPPLSPSGSPRESSPNW--TYGVPNSSPVAAANKPLHHKSFSFVNMDASSVSASPVVHPSFGLQSPRRHHSITIPPTHDSRGLSSPVSSLSNDGSSQSPSNAVSDLIGSLQSLDLNGGGSSTATVPSGPSQWLQAEASYA-ALHRSCSPRASNLRHC-SYSLPSTPTKSRWEKNWESDFFAQEEPLQRVESGRELRAKIYSRLSREN---PDNINAESPDLGWVNELVK

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
490			25	75	1.0
491	75			25	1.0
492		25		75	1.0
494	75			25	1.0
497		25	75		1.0
499	75			25	1.0
504	75	25			1.0
505			75	25	1.0
506	75		25		1.0
508		25	75		1.0
509	25	75			1.0
511			75	25	1.0
545		20		80	0.999996
547		80		20	0.999996
549	80		20		0.999996
550			80	20	0.999996
553	77	22			0.999999
556		77	22		0.999999
558		22		77	0.999999
560			22	77	0.999999
562	77	22			0.999999
564		22		77	0.999999
565	77			22	0.999999
568	22		77		0.999999
664	11		88		0.923564
674		88		11	0.923564
681		88		11	0.923564
715		85		14	0.993533
720	14	85			0.993533
733		83		16	0.994512
734	16		83		0.994512
742		16	83		0.994512
746	16		83		0.994512
771	75			25	0.996473
774			75	25	0.996473
799		66		33	0.997452
800	33		66		0.997452
1558	88			11	0.923564
1585	11		88		0.923564
1617	11		88		0.923564
1623		88		11	0.923564
1642			14	85	0.993533
1695	12		87		0.992554
1701		87		12	0.992554
1839		16		83	0.994512
1875	83	16			0.994512
1878	85	14			0.993533
1879			14	85	0.993533
1881		14		85	0.993533
1887	85	14			0.993533
1888		14	85		0.993533
1893			85	14	0.993533
1923	88		11		0.923564
2210	83		16		0.994512
2409		60		40	1.0
2416		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain