SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17106

Length: 2224 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17106
ATGGGGATATCTTATCATGTCTGACTTGTATTTTAATCATCAATTTGGTAACTTCCACCGGGGTATCTACCTCATCAACTCAAGGGCTTATACAAGCAAGGATTCTCAGGTCTGAATTTAGACTTTTTCTTATTCCGAGGAGGACGATAGTTCATTGAAGAATTCCTATTCTCGATCCTGCTTCTTCTGATTTCTGGGTCTGTCTTAGAGCACACATTCTGGTCTTTTCTTAGACCTGCACATTATTTTGAAGGGCATTTACCACGTTTTGCTCATCATTTGCACGCAGACTTTGCAATCAGATCTGATCATTGAATGCAAAGAGAGTTGCAGAGAGCGTTAAATGTTATATTGGAACCTCTGAAACTGACTGCATAGGAGGAGACCAGCAGAGTTCATGGGAAATTGCTTAGATGCACCTATTAAAGCAGAGAGTCCTGTTTGTACTAGTGTGCCTTCTTCTGGGAATTCAAAGTCTACCAGCAAAGATGTTCCATCATCTTTCAGTGTGAAGACAAATGAGAGTTTCCCATCTACTCCCAAGTCTGAAGGGGAGATCCTCTCTTCATCAAATTTGAAGGTTTTCACTTTCAATGAGCTCAGAAGTGCAACAAGAAATTTCCGTCCCGACAGCCTCTTGGGTGAGGGTGGATTTGGGTCGGTGTTCAAGGGCTGGATTGATGAGCATGGATTGGGGGCCTCCAGACCTGGTATGGGCATTGTTATTGCTGTGAAAAAACTCAACCCGGAAGGTTATCAAGGCCATAGAGAATGGCTGGCAGAGGTGAATTATCTGGGCCAACTCCACCATCCCAATCTTGTTAGGCTCATAGGATACTGTGCAGAGGACGATCACCGCCTGTTGGTCTATGAGTTTATGCAGAAAGGAAGTCTGGAGAATCATCTGTTCAGAAAAGGTTCTCAGCCACTTTCCTGGGCCATAAGGATAAAAGTAGGTGTGGGGGCTGCTAGGGGACTTGCATTTCTTCACAATGCAGAAAGACAAGTTATTTATCGCGATTTCAAGGCATCAAACATCCTTCTGGATTCGAATTTTAATGCAAAGCTCTCTGACTTTGGACTAGCAAAGGATGGCCCAACGGGTGATAACACACATGTCTCTACAAGGGTAATGGGTACTTATGGCTATGCTGCTCCTGAATATGTAGCAACAGGTCGTTTGACAGTCAAGAGTGATGTGTACAGCTTTGGGGTTGTCTTATTGGAACTATTGTCAGGTCGCCGTGCTGTAGAGAAGAACAAGCCTGGAATTGAACAGAATTTAGTGGAGTGGGCTAGACCATATCTGAGTGATAAACGCAAATTGTATCTTGTTATGGATACCAAATTGGAGGGTCAGTACTCCATGAAAGGTGCCCATAAAGCAGCAACACTTGCTCTGCAGTGTCTTAACTCCGAAGCAAAACATAGGCCCCTTATGACAGAAGTACTTGAGACATTAGAACAGTTGCAGAATGTCAAGGAAATGGCAAAGTATTCTCAGCCTGAAAGAACTGGACAGAAGCAGTCTGGGGCTAATGTCAATCCCACTGGGCACTCTCCTTTTAATCATAGAAACGCAAATCATCTTCCTACTGGTCTTCCAAGAGCAGGTGCTTCTCCACTAAATTCATATCAGCGGTCCCCAAGGGCAGGCTGAACTGATCAATGACATTAAAACAAATTTGATCATCTGTGGACTGTCAGTGATTTGCAGTCTTGATATTTACAGCTGCCTTTTGAGGGTTGTGGAAAAAATGACCAAGGTATCTTGTGTGCATGACGGGGTCAGCAAGCCTTTGTATATTTCCAAGATTATGTAATTTCAAATTTGTGCAGTTATGATATCGACTTAGTGAAAGCTTTTGTCTGAACTATGTAGCAGACAAAATCTGAGTGTAGATGTTGATGTGAAATCTATTTTTAGCCTCCTCCAAGTACTAATTACTGTTGTGATTAGTTAAATTTTTCTGGTCACAGCCCTGAGCTTTATCTCAGAGCATATGTACAACAACAAACATCATTCGGATCATTTATATTCTTAAATTCAATATTTTGTATTATTTATTTCGCTCTCCAAGAGTAATATTATCTCCATGGAATCTGGTGGCATGAATAATATTGGATGCATTTACACTTGGGGTATTACATTTTATTAAGTAGATGGCACTGGATGTTATCATTATGATCCTGAAGTATTTTATTACTTTTTGGCTCTTTTGCT

Ace file of the UniGene sp_v1.1_unigene17106

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase APK1A, chloroplast precursor, putative (EC:2.7.10.2)	-	-	66%
FL-Next	sp=Protein kinase 2B, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	protein kinase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	77%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	77%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	77%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	77%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	77%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	77%
Blast2go	Protein kinase-like domain	IPR011009	-	77%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	77%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O49840

Fln msg:

Fln protein: MGNCLDAPIKAESPVCTSVPSSGNSKSTSKDVPSSFSVKTNESFPSTPKSEGEILSSSNLKVFTFNELRSATRNFRPDSLLGEGGFGSVFKGWIDEHGLGASRPGMGIVIAVKKLNPEGYQGHREWLAEVNYLGQLHHPNLVRLIGYCAEDDHRLLVYEFMQKGSLENHLFRKGSQPLSWAIRIKVGVGAARGLAFLHNAERQVIYRDFKASNILLDSNFNAKLSDFGLAKDGPTGDNTHVSTRVMGTYGYAAPEYVATGRLTVKSDVYSFGVVLLELLSGRRAVEKNKPGIEQNLVEWARPYLSDKRKLYLVMDTKLEGQYSMKGAHKAATLALQCLNSEAKHRPLMTEVLETLEQLQNVKEMAKYSQPERTGQKQSGANVNPTGHSPFNHRNANHLPTGLPRAGASPLNSYQRSPRAG*

Protein Length: 422

Fln nts: ATGGGGATATCTTATCATGTCTGACTTGTATTTTAATCATCAATTTGGTAACTTCCACCGGGGTATCTACCTCATCAACTCAAGGGCTTATACAAGCAAGGATTCTCAGGTCTGAATTTAGACTTTTTCTTATTCCGAGGAGGACGATAGTTCATTGAAGAATTCCTATTCTCGATCCTGCTTCTTCTGATTTCTGGGTCTGTCTTAGAGCACACATTCTGGTCTTTTCTTAGACCTGCACATTATTTTGAAGGGCATTTACCACGTTTTGCTCATCATTTGCACGCAGACTTTGCAATCAGATCTGATCATTGAATGCAAAGAGAGTTGCAGAGAGCGTTAAATGTTATATTGGAACCTCTGAAACTGACTGCATAGGAGGAGACCAGCAGAGTTC_-_ATGGGAAATTGCTTAGATGCACCTATTAAAGCAGAGAGTCCTGTTTGTACTAGTGTGCCTTCTTCTGGGAATTCAAAGTCTACCAGCAAAGATGTTCCATCATCTTTCAGTGTGAAGACAAATGAGAGTTTCCCATCTACTCCCAAGTCTGAAGGGGAGATCCTCTCTTCATCAAATTTGAAGGTTTTCACTTTCAATGAGCTCAGAAGTGCAACAAGAAATTTCCGTCCCGACAGCCTCTTGGGTGAGGGTGGATTTGGGTCGGTGTTCAAGGGCTGGATTGATGAGCATGGATTGGGGGCCTCCAGACCTGGTATGGGCATTGTTATTGCTGTGAAAAAACTCAACCCGGAAGGTTATCAAGGCCATAGAGAATGGCTGGCAGAGGTGAATTATCTGGGCCAACTCCACCATCCCAATCTTGTTAGGCTCATAGGATACTGTGCAGAGGACGATCACCGCCTGTTGGTCTATGAGTTTATGCAGAAAGGAAGTCTGGAGAATCATCTGTTCAGAAAAGGTTCTCAGCCACTTTCCTGGGCCATAAGGATAAAAGTAGGTGTGGGGGCTGCTAGGGGACTTGCATTTCTTCACAATGCAGAAAGACAAGTTATTTATCGCGATTTCAAGGCATCAAACATCCTTCTGGATTCGAATTTTAATGCAAAGCTCTCTGACTTTGGACTAGCAAAGGATGGCCCAACGGGTGATAACACACATGTCTCTACAAGGGTAATGGGTACTTATGGCTATGCTGCTCCTGAATATGTAGCAACAGGTCGTTTGACAGTCAAGAGTGATGTGTACAGCTTTGGGGTTGTCTTATTGGAACTATTGTCAGGTCGCCGTGCTGTAGAGAAGAACAAGCCTGGAATTGAACAGAATTTAGTGGAGTGGGCTAGACCATATCTGAGTGATAAACGCAAATTGTATCTTGTTATGGATACCAAATTGGAGGGTCAGTACTCCATGAAAGGTGCCCATAAAGCAGCAACACTTGCTCTGCAGTGTCTTAACTCCGAAGCAAAACATAGGCCCCTTATGACAGAAGTACTTGAGACATTAGAACAGTTGCAGAATGTCAAGGAAATGGCAAAGTATTCTCAGCCTGAAAGAACTGGACAGAAGCAGTCTGGGGCTAATGTCAATCCCACTGGGCACTCTCCTTTTAATCATAGAAACGCAAATCATCTTCCTACTGGTCTTCCAAGAGCAGGTGCTTCTCCACTAAATTCATATCAGCGGTCCCCAAGGGCAGGCTGA___ACTGATCAATGACATTAAAACAAATTTGATCATCTGTGGACTGTCAGTGATTTGCAGTCTTGATATTTACAGCTGCCTTTTGAGGGTTGTGGAAAAAATGACCAAGGTATCTTGTGTGCATGACGGGGTCAGCAAGCCTTTGTATATTTCCAAGATTATGTAATTTCAAATTTGTGCAGTTATGATATCGACTTAGTGAAAGCTTTTGTCTGAACTATGTAGCAGACAAAATCTGAGTGTAGATGTTGATGTGAAATCTATTTTTAGCCTCCTCCAAGTACTAATTACTGTTGTGATTAGTTAAATTTTTCTGGTCACAGCCCTGAGCTTTATCTCAGAGCATATGTACAACAACAAACATCATTCGGATCATTTATATTCTTAAATTCAATATTTTGTATTATTTATTTCGCTCTCCAAGAGTAATATTATCTCCATGGAATCTGGTGGCATGAATAATATTGGATGCATTTACACTTGGGGTATTACATTTTATTAAGTAGATGGCACTGGATGTTATCATTATGATCCTGAAGTATTTTATTACTTTTTGGCTCTTTTGCT

Fln Alignment:

sp_v1.1_unigene17106___MGNCLDAPIKAESPV------CTSVPSSGNSKSTSKDVPSSFSVKTNESFPS--TPKSEGEILSSSNLKVFTFNELRSATRNFRPDSLLGEGGFGSVFKGWIDEHGLGASRPGMGIVIAVKKLNPEGYQGHREWLAEVNYLGQLHHPNLVRLIGYCAEDDHRLLVYEFMQKGSLENHLFRKGSQPLSWAIRIKVGVGAARGLAFLHNAERQVIYRDFKASNILLDSNFNAKLSDFGLAKDGPTGDNTHVSTRVMGTYGYAAPEYVATGRLTVKSDVYSFGVVLLELLSGRRAVEKNKPGIEQNLVEWARPYLSDKRKLYLVMDTKLEGQYSMKGAHKAATLALQCLNSEAKHRPLMTEVLETLEQLQNVKEMAKYSQPERTGQKQSGANVNPTGHSPFNHRNANHLPTGLPRAGASPLNSYQRSPR
O49840_______________MGNCLDSSAKVDSSSHSPHANSASLSSRVSSKTSRSTVPSSLSINSYSSVESLPTPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAIGAAKGLTFLHDAKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKVGMEQSLVDWATPYLGDKRKLFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVLAKLDQLESTKPGTGVGNRQAQIDSPRGSNGSIVQKSP--RRYSYDRPLLHITPGASPLPTHNHSPR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
776	20		80		0.995493
862		83	16		0.994512
863	83		16		0.994512
864		83	16		0.994512
1301	12		87		0.992554
1501	75			25	0.996473
1502	75		25		0.996473
1504			25	75	0.996473
1626			11	88	0.923564
1630	11	88			0.923564
1632	88	11			0.923564
1633		88		11	0.923564
1635	88		11		0.923564
1636	88		11		0.923564
1637	88	11			0.923564
1643	88	11			0.923564
2041	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain