SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17104

Length: 2535 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17104
CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTCGTCGTTCCTTTCACTCACTTTTTCGTTTCCACCACTAACACTCCCCTTTCCGCGGGGTTCGTTAAGGTTTCGCAGTTCTTTGCCTGCAAAATTAAGGGATTTTTAGCTCTCCTTTTCTGCCACTGCCAGGAATCAAGAGGCAGTACAGCATGGCAGACAACAATGTAAATGAAATCATAATTGCTGAAAGAGATCAAGGTGAATGTTCAGATGCAACTGTTGAGATAAAGGTTAAAACACTGGATTCACAGACGTACACTTTAAGAGTCGATAAATGTATGCCTGTTCCAGCATTGAAAGAACAAATTGCAACTGTTACTGGGGTGCTTTCAGACCAGCAGCGACTTATTTGTCGGGGAAAGGTCTTAAAGGATGACCAGCTTTTATCAGCGTATCATGTCGAGGATGGACACACACTACATTTGGTGGTTCGACAGCCCCTTCAACAGCCACCTTCATTTATGGCAGGAATTGCGGGTGATGGCCATTCTGAGTCTCAAGGAGCTGTTCCTATTGCAGGTGATACTCGAAACAGGAGTGGGCAAGTGTCCCACAGTGTGGTGCTTGGGACCTTTAACATTCCAGATCAAGGTGATGGGGGTATTCCAGATTTAAACAGGATTGTTTCAGCAGTGTTGAATTCTGTTGGCATTGGTAGTCTAGTACCTGTAAATGCTAGCATTGGCAATGGGTCAAGTACTATTGCTCAAGGAACTGGTTTGCAAGGGCAAGAAAGGGCAGGCAATGATGGTAGCAGATCAGATACCAATCAGCCACAGGCTGATCATATCTCAGATGTTCAGGTTGATCCTGGTCATGTTTCATTTCGTTTCCCCGGAGCACCATTGCTAAGGCCTTTTCAGCAAGCCACGGTTATCCCCGATTCATTGACAACATTGTCCCATTATTTAAATCGTATGAGGAATGAATTTGCACTAAACAGTTTTGATAATCAATCACAAACTAGTACCTTAGAAAGCAATGAAGCAGAGGGTTTCAGATCAACGGGTTTACAATCAGCTGCTGGAGGTTTGCCAACACCAGCAGTGTTGGGAGCAGTCATTCGGTCCACACAACAGTTACTGACTCAGCAGGCTGGAGCTTCACTTGATCAACTTGCCACGCAGCTGGAAGGTGAAGCAACTGTAACTGATGCATTGGCACGCAGTGAGATTCAGGCTGCTGCCATGCGAAATGGAATTATGATGCAGAATTTGGGTGCATTGTTGTTAGAGCTTGGACGCACCACAATGACATTGCGTATGGGACAGTCCTCGGCTGAGGCTGTAGTAAATGCTGGGCCAGCGGTATTTGTCTCTACTTCTGGTCCTAACCCTTTAATGGTTCAGCCCCTTCCTTTTGTGCCTGGCTCAAGTTTTGGTGCAATTCCTGTTGGATCCACCCAACAAGGTACAAGGATGACAGCAGGTTCTGTCACTCCAGGTGATGTACTAAGGAACATCGACATACATATAAGATCAGGGTCATCATCAGCTCCCAGTGCAAATGGTGAGCAAGGAGAACATGGTAGTGTGCAACAAGCAGAAGGACAGGGTTCAAGTGCTTTTGGGAGACAAGGTGTTTCGTCGGTTCTTGGGGAAACGAGTGCTGTACGGGTAGTGCCAGTGAGAACTGTAGTTGCTGCTGTCCCTGCAGCAATAAATGCACGTCCTCCTAGTGAATCAACTGGTGGTGCACTTGGTGTCTTTTATCCACTTCTTGCAAGATTTCAGCAGCTGAACCCCTCACAGATAACTCAAATTAGAAGTTCACCCCACACAGTTTTTTCTGGAGACAATCCTAGGAGTGCTGAGACTGCCCAACAACAGATCCCGGGATCGGTTTCCTTATCGACTACCTTGCCTCAAGTGCAGGTGCAGGCTTCTGTGCCGACAGCTAGTGAAAGTGGTGTCAGCCAGGAAGAATTGCGATTGGCCAATTTCCCAGCTTCAGCAGGTGCAACTTCAGCTGGTGAAAATCAACCTTTAGTGCAAGGGATGCCACAGAGACAACCTGGTTCATCTGCAGAGCAGGACTTAGGTCAAGGACCAGCCAATGTGCGTGGCTTTATCATAGATGTCGAGGGCCATAACATGCAAGAAGGTCATCCTCAGGGAAATGTTGGGACAACGAGTACTGAAGAAAGCTCTTCAATACAGCTACCCAATGGACTTGGTCAGTTATTTACTGGCATGGTCTCTGGAGGACAAACCAATAATGGAAGAAGAGAAACTGTGGACTTCATATCTCAGCTTCTTCACTATCCAGCAAGAAGCAGTATTTCGAGACAGTCTGCAGGACAAACTGAGACAGTTGCTCCTTCTGGAATAAGTAGCATGATTGAGCAGGCTATGCAAAACCCTTTTTCAAGAGGCAGTCAGTTGCAAATGATGGAGCGGATAGGAGAAAGAAGTCGAAATCTAGCAGAGATGTTCTCAGGTTTAAATAGGAATCAAAATGTTGATTTTTCAGGACTGTTGCAACAGACGATGCC

Ace file of the UniGene sp_v1.1_unigene17104

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin family protein	-	-	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	protein	-	-	55%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	55%
Blast2go	Ubiquitin supergroup	IPR019955	-	55%
Blast2go	Ubiquitin subgroup	IPR019956	-	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEH7

Fln msg: Distance to subject end: 127 aas, your sequence is longer than subject: 781 - 493

Fln protein: MADNNVNEIIIAERDQGECSDATVEIKVKTLDSQTYTLRVDKCMPVPALKEQIATVTGVLSDQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPLQQPPSFMAGIAGDGHSESQGAVPIAGDTRNRSGQVSHSVVLGTFNIPDQGDGGIPDLNRIVSAVLNSVGIGSLVPVNASIGNGSSTIAQGTGLQGQERAGNDGSRSDTNQPQADHISDVQVDPGHVSFRFPGAPLLRPFQQATVIPDSLTTLSHYLNRMRNEFALNSFDNQSQTSTLESNEAEGFRSTGLQSAAGGLPTPAVLGAVIRSTQQLLTQQAGASLDQLATQLEGEATVTDALARSEIQAAAMRNGIMMQNLGALLLELGRTTMTLRMGQSSAEAVVNAGPAVFVSTSGPNPLMVQPLPFVPGSSFGAIPVGSTQQGTRMTAGSVTPGDVLRNIDIHIRSGSSSAPSANGEQGEHGSVQQAEGQGSSAFGRQGVSSVLGETSAVRVVPVRTVVAAVPAAINARPPSESTGGALGVFYPLLARFQQLNPSQITQIRSSPHTVFSGDNPRSAETAQQQIPGSVSLSTTLPQVQVQASVPTASESGVSQEELRLANFPASAGATSAGENQPLVQGMPQRQPGSSAEQDLGQGPANVRGFIIDVEGHNMQEGHPQGNVGTTSTEESSSIQLPNGLGQLFTGMVSGGQTNNGRRETVDFISQLLHYPARSSISRQSAGQTETVAPSGISSMIEQAMQNPFSRGSQLQMMERIGERSRNLAEMFSGLNRNQNVDFSGLLQQTM

Protein Length: 782

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTCGTCGTTCCTTTCACTCACTTTTTCGTTTCCACCACTAACACTCCCCTTTCCGCGGGGTTCGTTAAGGTTTCGCAGTTCTTTGCCTGCAAAATTAAGGGATTTTTAGCTCTCCTTTTCTGCCACTGCCAGGAATCAAGAGGCAGTACAGC_-_ATGGCAGACAACAATGTAAATGAAATCATAATTGCTGAAAGAGATCAAGGTGAATGTTCAGATGCAACTGTTGAGATAAAGGTTAAAACACTGGATTCACAGACGTACACTTTAAGAGTCGATAAATGTATGCCTGTTCCAGCATTGAAAGAACAAATTGCAACTGTTACTGGGGTGCTTTCAGACCAGCAGCGACTTATTTGTCGGGGAAAGGTCTTAAAGGATGACCAGCTTTTATCAGCGTATCATGTCGAGGATGGACACACACTACATTTGGTGGTTCGACAGCCCCTTCAACAGCCACCTTCATTTATGGCAGGAATTGCGGGTGATGGCCATTCTGAGTCTCAAGGAGCTGTTCCTATTGCAGGTGATACTCGAAACAGGAGTGGGCAAGTGTCCCACAGTGTGGTGCTTGGGACCTTTAACATTCCAGATCAAGGTGATGGGGGTATTCCAGATTTAAACAGGATTGTTTCAGCAGTGTTGAATTCTGTTGGCATTGGTAGTCTAGTACCTGTAAATGCTAGCATTGGCAATGGGTCAAGTACTATTGCTCAAGGAACTGGTTTGCAAGGGCAAGAAAGGGCAGGCAATGATGGTAGCAGATCAGATACCAATCAGCCACAGGCTGATCATATCTCAGATGTTCAGGTTGATCCTGGTCATGTTTCATTTCGTTTCCCCGGAGCACCATTGCTAAGGCCTTTTCAGCAAGCCACGGTTATCCCCGATTCATTGACAACATTGTCCCATTATTTAAATCGTATGAGGAATGAATTTGCACTAAACAGTTTTGATAATCAATCACAAACTAGTACCTTAGAAAGCAATGAAGCAGAGGGTTTCAGATCAACGGGTTTACAATCAGCTGCTGGAGGTTTGCCAACACCAGCAGTGTTGGGAGCAGTCATTCGGTCCACACAACAGTTACTGACTCAGCAGGCTGGAGCTTCACTTGATCAACTTGCCACGCAGCTGGAAGGTGAAGCAACTGTAACTGATGCATTGGCACGCAGTGAGATTCAGGCTGCTGCCATGCGAAATGGAATTATGATGCAGAATTTGGGTGCATTGTTGTTAGAGCTTGGACGCACCACAATGACATTGCGTATGGGACAGTCCTCGGCTGAGGCTGTAGTAAATGCTGGGCCAGCGGTATTTGTCTCTACTTCTGGTCCTAACCCTTTAATGGTTCAGCCCCTTCCTTTTGTGCCTGGCTCAAGTTTTGGTGCAATTCCTGTTGGATCCACCCAACAAGGTACAAGGATGACAGCAGGTTCTGTCACTCCAGGTGATGTACTAAGGAACATCGACATACATATAAGATCAGGGTCATCATCAGCTCCCAGTGCAAATGGTGAGCAAGGAGAACATGGTAGTGTGCAACAAGCAGAAGGACAGGGTTCAAGTGCTTTTGGGAGACAAGGTGTTTCGTCGGTTCTTGGGGAAACGAGTGCTGTACGGGTAGTGCCAGTGAGAACTGTAGTTGCTGCTGTCCCTGCAGCAATAAATGCACGTCCTCCTAGTGAATCAACTGGTGGTGCACTTGGTGTCTTTTATCCACTTCTTGCAAGATTTCAGCAGCTGAACCCCTCACAGATAACTCAAATTAGAAGTTCACCCCACACAGTTTTTTCTGGAGACAATCCTAGGAGTGCTGAGACTGCCCAACAACAGATCCCGGGATCGGTTTCCTTATCGACTACCTTGCCTCAAGTGCAGGTGCAGGCTTCTGTGCCGACAGCTAGTGAAAGTGGTGTCAGCCAGGAAGAATTGCGATTGGCCAATTTCCCAGCTTCAGCAGGTGCAACTTCAGCTGGTGAAAATCAACCTTTAGTGCAAGGGATGCCACAGAGACAACCTGGTTCATCTGCAGAGCAGGACTTAGGTCAAGGACCAGCCAATGTGCGTGGCTTTATCATAGATGTCGAGGGCCATAACATGCAAGAAGGTCATCCTCAGGGAAATGTTGGGACAACGAGTACTGAAGAAAGCTCTTCAATACAGCTACCCAATGGACTTGGTCAGTTATTTACTGGCATGGTCTCTGGAGGACAAACCAATAATGGAAGAAGAGAAACTGTGGACTTCATATCTCAGCTTCTTCACTATCCAGCAAGAAGCAGTATTTCGAGACAGTCTGCAGGACAAACTGAGACAGTTGCTCCTTCTGGAATAAGTAGCATGATTGAGCAGGCTATGCAAAACCCTTTTTCAAGAGGCAGTCAGTTGCAAATGATGGAGCGGATAGGAGAAAGAAGTCGAAATCTAGCAGAGATGTTCTCAGGTTTAAATAGGAATCAAAATGTTGATTTTTCAGGACTGTTGCAACAGACGATGCC

Fln Alignment:

sp_v1.1_unigene17104___EESSSIQLPNGLGQLFTGMVSGGQTNNGRRETVDFISQLLHYPARSSISRQSAGQTETVAPSGISSMIEQAMQNPFSRGSQLQMMERIGERSRNLAEMFSGLNRNQN-VDFSGLLQQTM
D5AEH7_______________ENGSSAQLPNGLAEMFGNMARGGRPDNGRVDVGEIMSQLLRTPTMNNFISGMTEQTGTAPPGALSNVMEQVTRSPALRNTMQRMTEQLGEHGEDIDNMLSGMGGSQDGFDFSRVLQQMM

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
443			20	80	0.995493
455	80			20	0.995493
457	80		20		0.995493
460		80	20		0.995493
462	80		20		0.995493
465			20	80	0.995493
467			20	80	0.995493
468	20		80		0.995493
469		20	80		0.995493
470	20			80	0.995493
473		20		80	0.995493
474		20		80	0.995493
924		83		16	0.994512
1056	75	25			0.996473
1059	75		25		0.996473
1061		75	25		0.996473
1068	25			75	0.996473
1071	50	25		25	0.995533
1072	25	25	50		0.995533
1073	25		75		0.996473
1074		25	25	50	0.995533
1076			25	75	0.996473
1093			33	66	0.997452
1095			66	33	0.997452
1112	20	80			0.995493
1113		80		20	0.995493
1114	80		20		0.995493
1115		80	20		0.995493
1116	80		20		0.995493
1320			66	33	1.0
1506		81		18	0.999994
1662	88		11		0.923564
1726	11			88	0.923564
1727		88		11	0.923564
1729	88	11			0.923564
2083	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain