SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17073

Length: 1713 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17073

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(RAP Annotation release2) NERD domain containing protein n=3 Tax=Oryza sativa RepID=Q336N9_ORYSJ	-	-	41%
FL-Next	tr=Putative uncharacterized protein OSJNBa0027L23.9; Oryza sativa (Rice).	-	-	41%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	60%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q8W3G9

Fln msg:

Fln protein: MWFAVVFGVLIYKLMKGIITSKEFGPDWDSGIKIMVTKRLEKIYGGKAFQSLRIPDIASGARQSIDIVLLTQRELSIIAVRNFSGVLDVGADGGWTLINSKGQSGKIHNLVEETRGQAAILESYLERRGVAIPAGFMSCKVILTNPDCRPLLSIALQPEVLFYDKWMQLNEEAHGGFHSWAKSIFSGMELDTPDKINKKIRFILDTSPTWDRLELKGTHPIFGEFLGFKGKKEDMDALQVIKRSKVAKIVNYKPIMFDFLGGGSTVQLFCSSRDYRQEGPSQIDQIVVNARRDTEVVFQPIDAKKAQQFKIKKLVSMSLSP*

Protein Length: 323

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCGGCCACGACCATTTCTGATGGTTCCTTCGAAGCCAGGTTAAAGAAACCGGATGAAGTATAAATTTGGATTATCAATTGAGAGTTGATTCAATTGGCATACTTTGGTGGTCGTAATTTGATTGTAGTTTGTCAAAT_-_ATGTGGTTTGCTGTTGTTTTTGGGGTTTTAATTTACAAATTGATGAAAGGAATCATCACTTCTAAGGAATTTGGACCGGACTGGGATTCCGGCATCAAGATCATGGTGACCAAAAGACTTGAGAAAATCTATGGTGGGAAGGCGTTTCAGTCACTTCGAATTCCAGACATAGCAAGTGGGGCTCGACAAAGCATTGATATAGTCCTTCTCACCCAAAGAGAATTATCTATTATTGCTGTTAGGAACTTTTCGGGGGTTCTGGATGTGGGTGCTGATGGTGGTTGGACTCTAATAAACTCAAAGGGTCAATCCGGGAAGATTCATAATCTTGTGGAGGAAACAAGAGGGCAAGCTGCGATTCTTGAATCTTATCTTGAAAGAAGAGGAGTTGCTATACCTGCAGGGTTTATGAGTTGTAAAGTCATACTTACCAATCCTGATTGCAGGCCATTGCTGTCAATTGCTTTGCAGCCAGAGGTCTTATTCTATGACAAATGGATGCAACTAAATGAAGAGGCACATGGTGGATTTCACTCATGGGCAAAGAGTATATTTTCTGGAATGGAACTAGACACACCGGACAAAATTAATAAAAAGATTCGTTTTATTCTCGATACTTCTCCAACATGGGACAGGTTGGAGCTAAAAGGTACCCACCCTATATTTGGAGAATTTCTGGGATTCAAAGGAAAGAAGGAGGACATGGATGCCCTTCAAGTTATAAAGAGGTCAAAAGTGGCAAAGATAGTGAACTACAAACCGATAATGTTTGATTTTTTAGGGGGAGGTTCAACTGTTCAGTTATTTTGTTCATCTCGTGATTACAGACAAGAAGGTCCATCTCAAATTGATCAAATAGTGGTCAATGCGAGGAGAGACACTGAAGTGGTATTTCAACCAATAGATGCAAAAAAGGCTCAACAGTTCAAGATTAAAAAACTTGTCTCTATGTCATTGAGTCCATGA___ATAACATTTCAGGTGACTGATTCATTCCTTTGAAGAGAACATCGGCTACATTCATCCTGAGACAGGAAGGAGGGATGAAAGCTCCACAGGAAAAGTTCACTGCTAAATTTCCATGTAGATGTGTAAAATAGTAAAACTTGTGTGCAATTTGAGAGGTAATATATTACAATGTTTGTCATAAAACACAAGTTGTGACATTTTGTGTCACCAGTGCCTTGAAACCTGTGATTAATGATTAGCTTTCGTAATGGATTAAAAATCAAAAAAATTTGGACTAGTGACAACAGTCACTTGGCGTAAATGCAAAAGGTTTCACGAGACTGGAGGAAGTGAAGGTGAACTTCCAGTTGGGCAGAGGAGTTTCAGCTTTTGGTTATACATGAAGTGCTTCGGAATAGCAATACTGCAGTTTTTAAGTTTATTCCAGTTTTACCATAATTTGTAAAGACTCTGAAGAAACTTTCAGGATATATGTTACTATAATAAGATAGGGTTTAATTTAGTCACAAAGAGTATTGGCTGCATTAAGGTGGCCTAGTTTGAATGAGATGGAAGGGTATATGGGGTCTTGGATGTAGTCTTG

Fln Alignment:

sp_v1.1_unigene17073___MWFAVVFGVLIYKLMKGIITSKEFGP----DWDSG---IKIMVTKRLEKIYGGKAFQSLRIPDIASGARQSIDIVLLTQRELSIIAVRNFSGVLDVGADGGWTL-INSKGQSGKIHNLVEETRGQAAILESYLERRGVAIPAGFMSCKVILTNPDCRPLLSIALQPEVLFYDKWMQLNEEAHGGFHSWAKSIFSGMELDTPDKINKKIRFILDTSPTWDRLELKGTHPIFGEFLGFKGKKEDMDALQVIKRSKVAKIVNYKPIMFDFLGGGSTVQLFCSSRDYRQEGPSQIDQIVVNARRDTEVVFQPIDAKKAQQFKIKKLVSMSLS
Q8W3G9_______________MWVEILCGLLAYKIIRRVFFADSDDPAHLADLDSAHSDLCFALASRLEKLYSARCFVGLRIPDPDAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVLQVNRLAANLQSYLEKRGAKLPDGHITGKIVLPNPNCRPSYAITLQPEVILYDQWKDLKADSKGGLSTWIKGAFSGSKGDMQDSLLQNLHFILSTSPMWDRLELKGDRNILGEFIEFKGRHDDIQALKCLKRSKVCRFIVQKSTLFGGF-GRSRVQILYSPRDYRAEGTSSSEWKEISVKQYTEILFQPLHSKKVKKFKLSSVASVTLS

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
126	75	25			0.996473
185		50		50	1.0
238		30	69		1.0
247		30	69		1.0
273	69		30		1.0
274		69		30	1.0
278	69		30		1.0
284		30		69	1.0
315			66	33	1.0
344			33	66	1.0
378	63	36			1.0
383	45		54		1.0
420	66		33		1.0
428		11		88	0.923564
435			88	11	0.923564
437			11	88	0.923564
438		11	88		0.923564
445	11		88		0.923564
446		11		88	0.923564
447	11			88	0.923564
450	88	11			0.923564
457	66			33	1.0
466	33		66		1.0
478	85		14		0.993533
518		85		14	0.993533
519	71		28		1.0
579		10		90	0.90298
697	14		85		0.993533
740	85			14	0.993533
742		85	14		0.993533
743			85	14	0.993533
747	85			14	0.993533
748	85			14	0.993533
749	83		16		0.994512
750	83		16		0.994512
751		16		83	0.994512
754	83			16	0.994512
755		16		83	0.994512
757	83			16	0.994512
758	83	16			0.994512
901		25		75	0.996473
944	60	40			1.0
946			40	40	1.0
947		40	60		1.0
949			60	40	1.0
950	40		60		1.0
951	40		60		1.0
952	20	40	40		1.0
953		40	20	40	1.0
955		40		60	1.0
956	60		40		1.0
957	60		40		1.0
962		40		60	1.0
963	80	20			0.995493
964	40	40	20		1.0
965			40	60	1.0
966		40		40	1.0
967	40			60	1.0
1038	42		57		1.0
1078	42			57	1.0
1161		14		85	0.993533
1174	83		16		0.994512
1197	16		83		0.994512
1215		85	14		0.993533
1216	85			14	0.993533
1220	71		14	14	0.984337
1221	85		14		0.993533
1223	85	14			0.993533
1224	85	14			0.993533
1228		85	14		0.993533
1229	85		14		0.993533
1233		85		14	0.993533
1234		16		83	0.994512
1236	83			16	0.994512
1243	16	83			0.994512
1621	30		70		1.0
1634	12		87		0.992554
1635	12	12		75	0.975346
1636	12	87			0.992554
1637	80		20		0.995493
1638	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain