SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17057

Length: 685 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17057

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide transporter PTR1 n=2 Tax=Arabidopsis RepID=PTR1_ARATH	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	proton-dependent oligopeptide transport family protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	tripeptide transport	GO:0042939	Biological Process	81%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	81%
Blast2go	dipeptide transport	GO:0042938	Biological Process	81%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	81%
Blast2go	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	81%
Blast2go	tripeptide transporter activity	GO:0042937	Molecular Function	81%
Blast2go	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	81%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
52	75			12	0.975346
285			88	11	0.923564
462		90		10	0.90298
472	76	23			1.0
473			23	76	1.0
475		23	76		1.0
476		76	23		1.0
480		23		76	1.0
481	7	23	69		1.0
484			25	75	1.0
485			25	75	1.0
488	75		25		1.0
490		25		41	1.0
491	25			75	1.0
492		25	75		1.0
494		25	75		1.0
495	25			66	1.0
611		88		11	0.923564
615			11	88	0.923564
671	14			85	0.993533
680		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain