SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17056

Length: 937 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17056

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ferredoxin thioredoxin reductase catalytic beta chain family protein	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ferredoxin-thioredoxin reductase	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	metal ion binding	GO:0046872	Molecular Function	87%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	87%
Blast2go	ferredoxin-NAD(P) reductase activity	GO:0008937	Molecular Function	87%
Blast2go	ferredoxin:thioredoxin reductase activity	GO:0030385	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ferredoxin thioredoxin reductase beta subunit, domain	IPR004209	-	0.0	87%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
26		66	33		0.997452
27	66		33		0.997452
28		66	33		0.997452
60	33		66		1.0
131	80		20		0.995493
132			20	80	0.995493
133		80	20		0.995493
134		80	20		0.995493
178	16	83			0.994512
179		83		16	0.994512
180	83		16		0.994512
182	83		16		0.994512
183		83	16		0.994512
594	90		10		0.90298
599		12		87	0.992554
602			12	87	0.992554
607			87	12	0.992554
608		12	87		0.992554
610	87	12			0.992554
613	87		12		0.992554
678		66	33		1.0
885	11	88			0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
745	757	AGAA AGAA AGAA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain