SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17055

Length: 2174 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17055
CGTCGTGACCTTGGCTGTCACTCAGTATCAGAAATCACTGCGGCAAAAGCCTCCCTTATTTAAATCTCATAAACCCTTACCTATCATGTATCAGAAATCCCTGCGGCAGAAACCCTAGCTGTCGTTGCTGGATCCGTCATCGAAGGTGGTCATGTCATCCCGTCTGTTTCTCCTCCGCACTTTTGCCCGGGCAAGGGCCTTCTCTACAACTTCATCAACGTTTACTGCTCATTCTTCTTCACCTGCTCTATTACCCAAATCCTCCTCTGCTCTGCTACCTAAATCTTCCTCCCCTGTTTGGTCAGGTTACGACCATTTACTTGGTTTTAATGGGCCGTCACTGTTGTCACGATGCACGATTGTTCGTTGCCGGGTTTCGAACTCTGGATCGGTGTATTCCCCTCTAGATTCCAATGATTCAGGCAGGCGAGAACCTCTTTTCCCGGGTTGCGACTATGAGCATTGGCTCGTCACTATGGAGTTTCCAGACCCGCAAACTACCCGTGAACAAAAGATCGAGACTTTTGTCAAGACGCTCGCAAACGTTGTCGGAAGTGAAGAGGAGGCGAAAAAGAGAATATATGCACTATCCACGACAACTTACACTGGATTTATGTGTGAAATTTCTGAAGAACTTTCAGAAAAAATCAAGAAGGAGCCTGGAGTTGAATGGGTGCTGCCTGATTCCTATGGCGACCCCATAAAGAAGGAATATGGGGTTGGGGACAAGTACATAAATGGAGTGATCATACCTGATACAAGGGTCTATAATAGGCCGACTGGGAGGGACAGACCTCGAAATCGAAGAAGAGATTCAATGCCTATTGAGCGGAGAGATGTACCAACATCAAGAGTCCCTCTGCCAACATTAGGTGGAAGGGATACCGTACAGGGAAATAGTGTGCAGGGTGACCAACGGGATTTTAGGCCAACAGAAAGTAGGGACAACATGCAGGGGGGTCAAGGGGTCTACAGACCTATGGATGGAAGAGCCCCAATGGCAGGAGATCGACCAGACTACAGGCCGCCTTTGGATGCAAGGGGTCCACTGCCGGGAGATCGACAAGACTACAGACCTCCTGTGGATGCAAGGGGTCCACTGCCGGGAGATCGACAAGACTACAGACCACCTGTGGATGCAAGGGGTCCAATGTCGGGATATCGACAAGACTACAGGCCACCTGTGGATGCAAGGGGTTCGACGCCAGGATATCAACAAGACTACAGGCCACCTATGGATGCAAGGGGTCCAACGCCGGGATATCAACAAGACTACAGGCCACCTGTAGATGCAAGGGCTCCAATGCCGGGATATCAACAAGATTACAGGCCACCTGTGGATACAAGGGGCCCATTGCCTGGAAATCAGCAATCCTACAGGCCACCTTCGGATGGAAGAGGTCCGATGTCAGGAGTCCCACAAGATTATAGGTCTCCTGTAGATGCACGAGGCCCAATGCCGGTATCCGGAGACCGACAAGACTACAGGCCACCAGTGGATTCAAGAGGCCCGATGCCGGGAGGCCAGCCAGACTACAGGCCATCTATGGAAGGAAGAGGTTGGATGCCAGGTCAGCAACAAGACTACATACCGCCAGTGGAAGGAGGAGGCTCAGTATCAGGAGAGAGCAGAGATTACATGCCTTCTAGAGAACCAACACAGGGTCAACAGTGAGATTCAATGGGAGTACAAGGCCAATATTTAGTGCATGTGGTGTAAAGGAGGCCTTTTCGATGACCAATGGAACAAACTACTTCAACATGTCTAGTTTCAAGAGGAAGTTAAGCTGCTTGCAAAATTGAACTGGAAATGTATAAACGATAGTCTTATCCCTTTTGTGGAAAGATCTGATTGTTTTAGTTATAGGCAGGTTAATGAAGATTACCATACATGACTGGGTGAACAGAAGAGAAATGCGACTATTGGGGTTTGTTCTCCATGTTTGATTCCATACTGCCTTTTTTTGCTCATTGAATAGGATTAGTGGTTTGCAAGGTGTAGGTGGGTGGTCTTTCAGTTTAGTTGTTACTAGACTACAAATTTATGTTATTCTTCATTCTGTTTTTTAAGAACAGTTGGGGGACATGATATGATGTACGGAAGGAACACTTCGATATAATTATTGTGGAAGTTACCAAACTGTAATTTGCATAGATGTTTGTCAATTATTGGT

Ace file of the UniGene sp_v1.1_unigene17055

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plastid developmental protein DAG, putative	-	-	2.0e-30	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	dag protein	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	64%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVN0

Fln msg: your sequence is shorter than subject: 508 - 525

Fln protein: MSSRLFLLRTFARARAFSTTSSTFTAHSSSPALLPKSSSALLPKSSSPVWSGYDHLLGFNGPSLLSRCTIVRCRVSNSGSVYSPLDSNDSGRREPLFPGCDYEHWLVTMEFPDPQTTREQKIETFVKTLANVVGSEEEAKKRIYALSTTTYTGFMCEISEELSEKIKKEPGVEWVLPDSYGDPIKKEYGVGDKYINGVIIPDTRVYNRPTGRDRPRNRRRDSMPIERRDVPTSRVPLPTLGGRDTVQGNSVQGDQRDFRPTESRDNMQGGQGVYRPMDGRAPMAGDRPDYRPPLDARGPLPGDRQDYRPPVDARGPLPGDRQDYRPPVDARGPMSGYRQDYRPPVDARGSTPGYQQDYRPPMDARGPTPGYQQDYRPPVDARAPMPGYQQDYRPPVDTRGPLPGNQQSYRPPSDGRGPMSGVPQDYRSPVDARGPMPVSGDRQDYRPPVDSRGPMPGGQPDYRPSMEGRGWMPGQQQDYIPPVEGGGSVSGESRDYMPSREPTQGQQ*

Protein Length: 509

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATCAGAAATCACTGCGGCAAAAGCCTCCCTTATTTAAATCTCATAAACCCTTACCTATCATGTATCAGAAATCCCTGCGGCAGAAACCCTAGCTGTCGTTGCTGGATCCGTCATCGAAGGTGGTC_-_ATGTCATCCCGTCTGTTTCTCCTCCGCACTTTTGCCCGGGCAAGGGCCTTCTCTACAACTTCATCAACGTTTACTGCTCATTCTTCTTCACCTGCTCTATTACCCAAATCCTCCTCTGCTCTGCTACCTAAATCTTCCTCCCCTGTTTGGTCAGGTTACGACCATTTACTTGGTTTTAATGGGCCGTCACTGTTGTCACGATGCACGATTGTTCGTTGCCGGGTTTCGAACTCTGGATCGGTGTATTCCCCTCTAGATTCCAATGATTCAGGCAGGCGAGAACCTCTTTTCCCGGGTTGCGACTATGAGCATTGGCTCGTCACTATGGAGTTTCCAGACCCGCAAACTACCCGTGAACAAAAGATCGAGACTTTTGTCAAGACGCTCGCAAACGTTGTCGGAAGTGAAGAGGAGGCGAAAAAGAGAATATATGCACTATCCACGACAACTTACACTGGATTTATGTGTGAAATTTCTGAAGAACTTTCAGAAAAAATCAAGAAGGAGCCTGGAGTTGAATGGGTGCTGCCTGATTCCTATGGCGACCCCATAAAGAAGGAATATGGGGTTGGGGACAAGTACATAAATGGAGTGATCATACCTGATACAAGGGTCTATAATAGGCCGACTGGGAGGGACAGACCTCGAAATCGAAGAAGAGATTCAATGCCTATTGAGCGGAGAGATGTACCAACATCAAGAGTCCCTCTGCCAACATTAGGTGGAAGGGATACCGTACAGGGAAATAGTGTGCAGGGTGACCAACGGGATTTTAGGCCAACAGAAAGTAGGGACAACATGCAGGGGGGTCAAGGGGTCTACAGACCTATGGATGGAAGAGCCCCAATGGCAGGAGATCGACCAGACTACAGGCCGCCTTTGGATGCAAGGGGTCCACTGCCGGGAGATCGACAAGACTACAGACCTCCTGTGGATGCAAGGGGTCCACTGCCGGGAGATCGACAAGACTACAGACCACCTGTGGATGCAAGGGGTCCAATGTCGGGATATCGACAAGACTACAGGCCACCTGTGGATGCAAGGGGTTCGACGCCAGGATATCAACAAGACTACAGGCCACCTATGGATGCAAGGGGTCCAACGCCGGGATATCAACAAGACTACAGGCCACCTGTAGATGCAAGGGCTCCAATGCCGGGATATCAACAAGATTACAGGCCACCTGTGGATACAAGGGGCCCATTGCCTGGAAATCAGCAATCCTACAGGCCACCTTCGGATGGAAGAGGTCCGATGTCAGGAGTCCCACAAGATTATAGGTCTCCTGTAGATGCACGAGGCCCAATGCCGGTATCCGGAGACCGACAAGACTACAGGCCACCAGTGGATTCAAGAGGCCCGATGCCGGGAGGCCAGCCAGACTACAGGCCATCTATGGAAGGAAGAGGTTGGATGCCAGGTCAGCAACAAGACTACATACCGCCAGTGGAAGGAGGAGGCTCAGTATCAGGAGAGAGCAGAGATTACATGCCTTCTAGAGAACCAACACAGGGTCAACAGTGA___GATTCAATGGGAGTACAAGGCCAATATTTAGTGCATGTGGTGTAAAGGAGGCCTTTTCGATGACCAATGGAACAAACTACTTCAACATGTCTAGTTTCAAGAGGAAGTTAAGCTGCTTGCAAAATTGAACTGGAAATGTATAAACGATAGTCTTATCCCTTTTGTGGAAAGATCTGATTGTTTTAGTTATAGGCAGGTTAATGAAGATTACCATACATGACTGGGTGAACAGAAGAGAAATGCGACTATTGGGGTTTGTTCTCCATGTTTGATTCCATACTGCCTTTTTTTGCTCATTGAATAGGATTAGTGGTTTGCAAGGTGTAGGTGGGTGGTCTTTCAGTTTAGTTGTTACTAGACTACAAATTTATGTTATTCTTCATTCTGTTTTTTAAGAACAGTTGGGGGACATGATATGATGTACGGAAGGAACACTTCGATATAATTATTGTGGAAGTTACCAAACTGTAATTTGCATAGATGTTTGTCAATTATTGGT

Fln Alignment:

sp_v1.1_unigene17055___VWSGYDHLLGFNGPSLLSRCTIVRCRVSNSGSVYSPLDSNDSGRREPLFPGCDYEHWLVTMEFPDPQTTREQKIETFVKTLANVVGSEEEAKKRIYALSTTTYTGFMCXXXXXXXXXXXXXPGVEWVLPDSYGDPIKKEYGVGDKYINGVIIPDTRVYXXXXXXXXXXXXXXXSMPIERRDVPTSRVPLPTLGGRDTVQGNSVQGDQRDFRPTESRDNMQGGQGVYRPMDGRA----------PMAGDRPDYRPPLDARGPLPGDRQDYRPPVDARGPLPGDRQDYRPPVDARGPMSGYRQDYRPPVDARGSTPGYQQDYRPPMDARGPTPGYQQDYRPPVDARAPMPGYQQDYRPPVDTRGPLPGNQQSYRPPSDGRGPMSGVPQDYRSPVDARGPMPVSGDRQDYRPPVDSRGPMPGGQPDYRPSMEGRGWMPGQQQDYIPPXXXXXXXXXXXRDYMPSREPTQGQQ*DSMGVQGQ
A9NVN0_______________VLSGYGHLCGFNRPSPPSRCMIVRCRVSNSGSVYSPLDSNDSGRRESLFPGCDYEHWLVTMEFPDPQTTREQKIDTFVKTLANVVGSEEEAKKRIYALSTTTYTGFMCEISEELSEKIKKEPGVEWVLPDSYGDPIKKEYGVGDKYINGVIIPDTRVYNRPTGRDRPRNRRRDSMPIERRDVQTSRDPLPTLGGRDNIQGNSVPGDQRDFRPTESRDSMQGGQRVYRPMDGRATVAGDRQDYRPLPGDRQDYRPPVDARGPVPGYRQDYRPPVDARGPMPGYQQDYRPPVDARGPFPGNQQDYRPPVDARGQFPGNQQDYRPPVDARGPMPEYRQDYRPPLDGRDSMSANQQDYRPPVDARGPMPEYRQDYRPPLDGRDSMSAVRQDYRSPVDARGPMPVSGDQQDYRPPVDPRGATQGGQLDYRPPTEGKGWMPGQRQDYMPPMEGGGSVSGESRGYMPSREPTQGQQRDSIGVQSQ

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
119	87		12		0.992554
120			87	12	0.992554
122	12			87	0.992554
123		12	87		0.992554
126	12		87		0.992554
141	88		11		0.923564
146	88	11			0.923564
147		11	88		0.923564
148			88	11	0.923564
483	12		87		0.992554
523	90		10		0.90298
597		14	85		0.999981
693		28		71	1.0
695		28	71		1.0
703	75			25	1.0
783		13		86	0.999973
864	12		87		0.992554
1745		5		95	0.997749
1969			90	10	0.90298
2013		52		47	1.0
2078			70	30	1.0
2116		22	77		0.999999
2137	85			14	0.993533
2138		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain