SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17041

Length: 1295 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17041

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	signal peptide peptidase family protein; K09598 signal peptide peptidase-like 3 [EC:3.4.23.-]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	signal peptide peptidase-like 3	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	85%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	endosome	GO:0005768	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase A22, presenilin signal peptide	IPR006639	-	0.0	85%
Blast2go	Peptidase A22B, signal peptide peptidase	IPR007369	-	0.0	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9U6

Fln msg: your sequence is shorter than subject: 272 - 537

Fln protein: VVTLAVNSKLGSVDPMVTRCCCRPFTRMQGILVLVSSALVIAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICSLLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANTLNLPGLQSITKKLELPVKLVFPRNLLGGMVPGNTAIEFMMLGLGDMAIPGMLLALVLCFDHRKSRDIGNVIDVPFVKGRKYIWYALSGYAAGLIAALAAGVLTQSPQPALLYLVPSTLGPVIFTSWVRSELNELWDGPRPIVNDKTRLMEV*

Protein Length: 273

Fln nts: CGTCGTGACCTTGGCTGTCAATTCTAAGCTTGGGTCGGTCGATCCCATGGTTACTCGGTGCTGCTGCCGGCCGTTCACTAGGATGCAGGGAATTTTGGTGTTGGTGAGCTCAGCTTTAGTGATTGCCTGGCTTGTATCCGGACACTGGATATTAAACAACCTTTTGGGCATTTCTATATGTATCGCATTTGTTAGCCATGTTCGGTTGCCAAATATCAAAATCTGCTCGCTGCTTCTCGTCTGTTTATTTGTGTACGACATTTTCTGGGTGTTCTTTTCAGAGCGATTTTTTGGAGCCAATGTAATGGTTTCAGTTGCCACACAGCAGGCTTCAAATCCAGTTCACACAGTTGCAAACACGCTTAATCTTCCGGGCTTGCAATCAATAACCAAGAAGTTGGAGCTTCCTGTTAAACTTGTCTTCCCAAGAAATTTGCTAGGTGGTATGGTGCCTGGAAATACTGCAATAGAATTCATGATGTTGGGCCTCGGTGACATGGCAATTCCTGGGATGCTTCTTGCATTGGTGCTTTGTTTTGATCATCGTAAGAGCAGGGATATTGGCAATGTCATAGATGTGCCATTTGTCAAGGGCCGCAAATACATATGGTATGCACTCTCAGGATATGCAGCCGGCCTCATAGCTGCCCTTGCAGCTGGTGTCTTGACACAGTCTCCACAGCCTGCTCTTTTGTACCTGGTCCCTTCCACTCTTGGACCTGTCATTTTTACTTCTTGGGTCAGAAGTGAACTGAATGAACTTTGGGATGGACCAAGACCAATTGTAAATGATAAAACACGTCTAATGGAGGTTTAA___TTGTTACGGCAAGTTTTCATATGGAATCCTTCTACCAAGTCAATGGGAAAGATTACCTGCCGGGAGAGTTTACATATTCTCCTGCATTCGGGTATCTATTTCTAACAATCATAATTTTATGTGTTTTAACCTTGTATTTTATCTTTTAGAGTGCACTGGCTTCATATTTATGGGTTCATCTAAATAGGACGAGAAGAATGAAGGGCAAGTCTAAGATAATCAAGAAATAATTGCGACACAGTGCTGATGTTTTGAATCCCCATTGCTTGCGTAATGGCCATACATTTTTTCTCATAGAGTCATATGCAATGCAGATAAGCTCTAGTTTCTGTTGGTTTCTTATAAATTCGTTACACTGAATAAAAATACGACAAATTTCTAGAAATGGAAAATTGTATAAGTTGAATTGCTGTGGTGATTCACACACACAGACAACAACCTTTCTTGATTGAAAAATGAGATGCACATGGCATTTACT

Fln Alignment:

sp_v1.1_unigene17041___VSGHWILNNLLGISICIAFVSHVRLPNIKICSLLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANTLNLPGLQSITKKLELPVKLVFPRNLLGGMVPGNTAIEFMMLGLGDMAIPGMLLALVLCFDHRKSRDIGNVIDVPFVKGRKYIWYXXXXXXXXXXXXXXXXVLTQSPQPALLYLVPSTLGPVIFTSWVRSELNELWDGPRP
D5A9U6_______________ISFAWIGQDILGITLIITVLQIVRLPNVKVSAVLLSCAFLYDIFWVFVSPKLFHESVMIVVARGDKS-------------GEDGIPMLLKIP-RLYDP---WGG---------YSIIGFGDILLPGLLIAFALRYDWAAKKSL---------QGGYFLWSMIGYGFGLFMTYVALNLMDGNGQPALLYIVPCTLGTVLTLGWLRGELSNLWSKGEP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
517	12	87			0.992554
518			12	87	0.992554
519	12			87	0.992554
523	12		87		0.992554
685		85		14	0.993533
687		14		85	0.993533
840	87	12			0.999964
916	42			57	1.0
1046	88		11		0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain